RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BUB1BO60566 1050 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-209ENST00000597423 LINC00271P0C7V0 271 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 CA8P35219 290 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 NDUFV1P49821 464 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 SMC1AQ14683 1233 aaKnown RBP16.03■□□□□ 0.16
TRIM28-209ENST00000597423 ACAP1Q15027 740 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 FAM102AQ5T9C2 384 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-209ENST00000597423 FAM183BPQ6ZVS7 135 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 ARCQ7LC44 396 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 PEX26Q7Z412 305 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 SLFN11Q7Z7L1 901 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 SCML4Q8N228 414 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 IRGQQ8WZA9 623 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 PGLYRP2Q96PD5 576 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 KCNK16Q96T55 309 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 CLSTN3Q9BQT9 956 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 ZBP1Q9H171 429 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 FBXO44Q9H4M3 255 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 ASNSD1Q9NWL6 643 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 COG5Q9UP83 839 aa16.03■□□□□ 0.16
TRIM28-209ENST00000597423 COL4A6Q14031 1691 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 TCRBV5S1A1TA0A578 114 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 MTMR11A4FU01 709 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 F8VP50 259 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 PAPSS1O43252 624 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-209ENST00000597423 BEST1O76090 585 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ABLIM3O94929 683 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 RTN3O95197 1032 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ZBED1O96006 694 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 CA3P07451 260 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 HAPLN1P10915 354 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ERVK-21P61565 698 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 MRPS5P82675 430 aaKnown RBP16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ROR1Q01973 937 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ADIGQ0VDE8 80 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 RPS6KA1Q15418 735 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 CCDC142Q17RM4 750 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 MGAT5BQ3V5L5 792 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 RAB41Q5JT25 222 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 PPP1R15BQ5SWA1 713 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 RSPO2Q6UXX9 243 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-209ENST00000597423 RNF19BQ6ZMZ0 732 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 NUP93Q8N1F7 819 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ATAD1Q8NBU5 361 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 MICAL1Q8TDZ2 1067 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 FNIP1Q8TF40 1166 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 SPATA17Q96L03 361 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 WDR24Q96S15 920 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ENTPD7Q9NQZ7 604 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 TMEM51Q9NW97 253 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 CHORDC1Q9UHD1 332 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-209ENST00000597423 ALG6Q9Y672 507 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 CAPN6Q9Y6Q1 641 aa16.02■□□□□ 0.16
TRIM28-209ENST00000597423 TMEM110-MUSTN1A8MSY1 372 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 GRXCR1A8MXD5 290 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 MIF4GDA9UHW6 222 aaKnown RBP16.01■□□□□ 0.15
TRIM28-209ENST00000597423 PIK3R2O00459 728 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 SPOPO43791 374 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 LILRB3O75022 631 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 HSF2BPO75031 334 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 RNF8O76064 485 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 PROSCO94903 275 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 C1RP00736 705 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 ADH1AP07327 375 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 ATF2P15336 505 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 DNAJB2P25686 324 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 MAN1A1P33908 653 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 ALDH1A3P47895 512 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 RNASE9P60153 205 aaKnown RBP16.01■□□□□ 0.15
TRIM28-209ENST00000597423 YWHAZP63104 245 aaKnown RBP16.01■□□□□ 0.15
TRIM28-209ENST00000597423 ADCY1Q08828 1119 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 DUSP4Q13115 394 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 OLFML1Q6UWY5 402 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 SLC26A9Q7LBE3 791 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 ARHGAP18Q8N392 663 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 UBL4BQ8N7F7 174 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 LRRC57Q8N9N7 239 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 ZMIZ2Q8NF64 920 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 SPPL3Q8TCT6 385 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 POF1BQ8WVV4 589 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 MCEEQ96PE7 176 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 SEPT5Q99719 369 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-209ENST00000597423 TCF25Q9BQ70 676 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 C17orf80Q9BSJ5 609 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 TLR9Q9NR96 1032 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 METTL5Q9NRN9 209 aaKnown RBP16.01■□□□□ 0.15
TRIM28-209ENST00000597423 SLC27A5Q9Y2P5 690 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.01■□□□□ 0.15
TRIM28-209ENST00000597423 IRAK3Q9Y616 596 aa16.01■□□□□ 0.15
TRIM28-209ENST00000597423 WDR27A2RRH5 827 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 HHLA1C9JL84 531 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 PDGFRAP16234 1089 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 PRLRP16471 622 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 RPL17P18621 184 aaKnown RBP16■□□□□ 0.15
TRIM28-209ENST00000597423 GPD1P21695 349 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 PSMA2P25787 234 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 SDC4P31431 198 aa16■□□□□ 0.15
TRIM28-209ENST00000597423 RFC1P35251 1148 aaPredicted RBP16■□□□□ 0.15
TRIM28-209ENST00000597423 ZNF143P52747 638 aaPredicted RBP16■□□□□ 0.15
TRIM28-209ENST00000597423 PLD1Q13393 1074 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms