RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 DLGAP2Q9P1A6 1054 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 CCL26Q9Y258 94 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 PIAS3Q9Y6X2 628 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 PIEZO1Q92508 2521 aa17.18■□□□□ 0.34
TRIM28-206ENST00000595974 C2orf78A6NCI8 922 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 ZNF840PA6NDX5 716 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 TNFRSF10BO14763 440 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 DCNP07585 359 aaKnown RBP17.17■□□□□ 0.34
TRIM28-206ENST00000595974 CCDC192P0DO97 292 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 TBXAS1P24557 533 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-206ENST00000595974 YWHAQP27348 245 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 ADORA2BP29275 332 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 YWHAEP62258 255 aaKnown RBP17.17■□□□□ 0.34
TRIM28-206ENST00000595974 CETN1Q12798 172 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 IFRD2Q12894 506 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-206ENST00000595974 TAF10Q12962 218 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 CUL2Q13617 745 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 ZMIZ2Q8NF64 920 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 TATDN2Q93075 761 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 FBXO32Q969P5 355 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 CYFIP2Q96F07 1278 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 SLC22A12Q96S37 553 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 SRRTQ9BXP5 876 aaKnown RBP17.17■□□□□ 0.34
TRIM28-206ENST00000595974 C8orf33Q9H7E9 229 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-206ENST00000595974 PNPLA8Q9NP80 782 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 IL37Q9NZH6 218 aa17.17■□□□□ 0.34
TRIM28-206ENST00000595974 FAM92AA1XBS5 289 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 SHISA7A6NL88 538 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 FAM170BA6NMN3 283 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 NCAM2O15394 837 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 TCF3P15923 654 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 CD72P21854 359 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 TARSP26639 723 aaKnown RBP17.16■□□□□ 0.34
TRIM28-206ENST00000595974 ZNF77Q15935 545 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 ZNF394Q53GI3 561 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 CLEC20AQ6ZU45 233 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 ARL14EPQ8N8R7 260 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-206ENST00000595974 ZFYVE19Q96K21 471 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 CYP2S1Q96SQ9 504 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 FBXO44Q9H4M3 255 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 ARHGAP26Q9UNA1 814 aa17.16■□□□□ 0.34
TRIM28-206ENST00000595974 FANCMQ8IYD8 2048 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 GOLGA6L22H0YM25 854 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 BEST1O76090 585 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 OLFM2O95897 454 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 OAS1P00973 400 aaKnown RBP17.15■□□□□ 0.34
TRIM28-206ENST00000595974 HDCP19113 662 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 KPNA1P52294 538 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-206ENST00000595974 RAD23BP54727 409 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 MAP3K7CLP57077 242 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 KCNH2Q12809 1159 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 MTF1Q14872 753 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 ITPRIPL2Q3MIP1 535 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 CC2D1AQ6P1N0 951 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-206ENST00000595974 RALGPS2Q86X27 583 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-206ENST00000595974 SLC4A11Q8NBS3 891 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 SCAMP5Q8TAC9 235 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 RIN3Q8TB24 985 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 FAM3CQ92520 227 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 TMEM176AQ96HP8 235 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 NT5C1BQ96P26 610 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 FAM83CQ9BQN1 747 aa17.15■□□□□ 0.34
TRIM28-206ENST00000595974 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.15■□□□□ 0.341e-7■□□□□ 10.5
TRIM28-206ENST00000595974 ABL1P00519 1130 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 AFPP02771 609 aaKnown RBP17.14■□□□□ 0.33
TRIM28-206ENST00000595974 CTHP32929 405 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 RPS9P46781 194 aaKnown RBP17.14■□□□□ 0.33
TRIM28-206ENST00000595974 TUBP50607 506 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 SLC7A9P82251 487 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 PDGFRLQ15198 375 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 PPP1R26Q5T8A7 1209 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-206ENST00000595974 SNX30Q5VWJ9 437 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 ARHGAP17Q68EM7 881 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 SH3RF2Q8TEC5 729 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 CLDN23Q96B33 292 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 CNOT6LQ96LI5 555 aaKnown RBP17.14■□□□□ 0.33
TRIM28-206ENST00000595974 HEXIM2Q96MH2 286 aaKnown RBP17.14■□□□□ 0.33
TRIM28-206ENST00000595974 GKN1Q9NS71 199 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 GTSE1Q9NYZ3 720 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 DACH1Q9UI36 760 aa17.14■□□□□ 0.33
TRIM28-206ENST00000595974 MTF2Q9Y483 593 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-206ENST00000595974 HHLA1C9JL84 531 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 SPECC1L-ADORA2AF8WAN1 911 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 H0Y858 1186 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 ZDHHC11BP0C7U3 371 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 TNK2Q07912 1038 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 LRMPQ12912 555 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 ANGPT1Q15389 498 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 DPCR1Q3MIW9 517 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 DDX42Q86XP3 938 aaKnown RBP eCLIP17.13■□□□□ 0.33
TRIM28-206ENST00000595974 ZNF687Q8N1G0 1237 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 UBR7Q8N806 425 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 KIAA1958Q8N8K9 716 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 LMO3Q8TAP4 145 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 MED15Q96RN5 788 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 IER2Q9BTL4 223 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 DUSP16Q9BY84 665 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 HPS4Q9NQG7 708 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 GMIPQ9P107 970 aa17.13■□□□□ 0.33
TRIM28-206ENST00000595974 NDRG2Q9UN36 371 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms