RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PIK3R2O00459 728 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 PIRO00625 290 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 CD4P01730 458 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 GJA9P57773 515 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 SH3PXD2AQ5TCZ1 1133 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 ARHGAP17Q68EM7 881 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 TAF2Q6P1X5 1199 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 C9orf72Q96LT7 481 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 TSPAN18Q96SJ8 248 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 FARP1Q9Y4F1 1045 aaPredicted RBP20.62■□□□□ 0.89
CLIP3-206ENST00000593074 DCAF8L1A6NGE4 600 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 KCNE1P15382 129 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 RGS7P49802 495 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 STAT4Q14765 748 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 FBXO47Q5MNV8 452 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 UBXN11Q5T124 520 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 SESTD1Q86VW0 696 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 RFX6Q8HWS3 928 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 PRCCQ92733 491 aaPredicted RBP20.62■□□□□ 0.89
CLIP3-206ENST00000593074 TTC25Q96NG3 672 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 FAM49BQ9NUQ9 324 aa20.62■□□□□ 0.89
CLIP3-206ENST00000593074 SMIM28A0A1B0GU29 152 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 IFNB1P01574 187 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 CYBAP13498 195 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 GDF10P55107 478 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 C15orf59Q2T9L4 293 aaPredicted RBP20.61■□□□□ 0.89
CLIP3-206ENST00000593074 CCDC14Q49A88 953 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 CALN1Q9BXU9 219 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 PHACTR1Q9C0D0 580 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 ARHGAP39Q9C0H5 1083 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 CCDC134Q9H6E4 229 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 SAYSD1Q9NPB0 183 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLIP3-206ENST00000593074 CTNNAL1Q9UBT7 734 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 HESX1Q9UBX0 185 aa20.61■□□□□ 0.89
CLIP3-206ENST00000593074 SLC6A3Q01959 620 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 CCDC38Q502W7 563 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 RAB6CQ53S08 254 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 PCGF5Q86SE9 256 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 ZDHHC17Q8IUH5 632 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 OR6B3Q8NGW1 331 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 KBTBD7Q8WVZ9 684 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 TRIB2Q92519 343 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 KHSRPQ92945 711 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLIP3-206ENST00000593074 ARHGEF2Q92974 986 aaKnown RBP20.6■□□□□ 0.89
CLIP3-206ENST00000593074 CFAP57Q96MR6 1250 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 ZNF560Q96MR9 790 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 RAB6CQ9H0N0 254 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 SPC25Q9HBM1 224 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 INTS9Q9NV88 658 aaKnown RBP20.6■□□□□ 0.89
CLIP3-206ENST00000593074 GDAP2Q9NXN4 497 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 EURLQ9NYK6 297 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 KLK14Q9P0G3 267 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 GABRQQ9UN88 632 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 PCNTO95613 3336 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 XPOTO43592 962 aaKnown RBP20.6■□□□□ 0.89
CLIP3-206ENST00000593074 PRPSAP2O60256 369 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 CDH16O75309 829 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 GABBR2O75899 941 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 SNX16P57768 344 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 DPYSL3Q14195 570 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 CHMP6Q96FZ7 201 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 ZNF317Q96PQ6 595 aaPredicted RBP20.6■□□□□ 0.89
CLIP3-206ENST00000593074 CCDC77Q9BR77 488 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 RNF39Q9H2S5 420 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 DPEP3Q9H4B8 488 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 RNF19AQ9NV58 838 aa20.6■□□□□ 0.89
CLIP3-206ENST00000593074 TRIP12Q14669 1992 aaPredicted RBP20.6■□□□□ 0.89
CLIP3-206ENST00000593074 PAPSS1O43252 624 aaPredicted RBP20.59■□□□□ 0.89
CLIP3-206ENST00000593074 GRAP2O75791 330 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 PNPLA4P41247 253 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 FLT3LGP49771 235 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 CDH6P55285 790 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 PDE4CQ08493 712 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 QPCTQ16769 361 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 NBPF20Q3BBV1 942 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 CXCL17Q6UXB2 119 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 MICALCLQ6ZW33 695 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 LIMS2Q7Z4I7 341 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 CRYBG2Q8N1P7 616 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 TEKT4Q8WW24 435 aa20.59■□□□□ 0.89
CLIP3-206ENST00000593074 A0A087WUV0 522 aaPredicted RBP20.58■□□□□ 0.89
CLIP3-206ENST00000593074 A8MXQ7 604 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 KPNA7A9QM74 516 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 M0QZ92 97 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 MCF2LO15068 1137 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 PGK1P00558 417 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 DRD4P21917 467 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 CTCFP49711 727 aaPredicted RBP20.58■□□□□ 0.89
CLIP3-206ENST00000593074 EIF3EP60228 445 aaKnown RBP20.58■□□□□ 0.89
CLIP3-206ENST00000593074 CDO1Q16878 200 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 CYP4F22Q6NT55 531 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 PPIL6Q8IXY8 311 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 RIBC1Q8N443 379 aaPredicted RBP20.58■□□□□ 0.89
CLIP3-206ENST00000593074 RSAD2Q8WXG1 361 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 IPPQ9Y573 584 aa20.58■□□□□ 0.89
CLIP3-206ENST00000593074 SPTLC1O15269 473 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 ALOX15BO15296 676 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 ALDH1A1P00352 501 aa20.58■□□□□ 0.88
CLIP3-206ENST00000593074 SDC4P31431 198 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms