RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ANKRD40Q6AI12 368 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 TRIM68Q6AZZ1 485 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 MAMSTRQ6ZN01 415 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 MAML2Q8IZL2 1156 aaPredicted RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 SYNPOQ8N3V7 929 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 SLC2A14Q8TDB8 520 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 OSCP1Q8WVF1 389 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ATP2A3Q93084 1043 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 SLC22A12Q96S37 553 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 KCNK16Q96T55 309 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 FAM126AQ9BYI3 521 aaPredicted RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 METTL14Q9HCE5 456 aaKnown RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 RAB20Q9NX57 234 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ARMCX3Q9UH62 379 aaPredicted RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 RIF1Q5UIP0 2472 aaKnown RBP13.12□□□□□ -0.31
SS18-225ENST00000585121 DMDP11532 3685 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 MIA3Q5JRA6 1907 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 MYO15AQ9UKN7 3530 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 FAM200BP0CF97 657 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 CCDC130P13994 396 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 TCF3P15923 654 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 CXCL12P48061 93 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 SLC5A3P53794 718 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 MAP3K7CLP57077 242 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 MCCD1P59942 119 aaPredicted RBP13.12□□□□□ -0.31
SS18-225ENST00000585121 INCA1Q0VD86 236 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 USP4Q13107 963 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 ORC1Q13415 861 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 ISM2Q6H9L7 571 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 TXNDC11Q6PKC3 985 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 PAQR9Q6ZVX9 377 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 ASCL5Q7RTU5 278 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 DDX42Q86XP3 938 aaKnown RBP eCLIP13.12□□□□□ -0.31
SS18-225ENST00000585121 FUKQ8N0W3 1084 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 SPEM1Q8N4L4 309 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 FBXO44Q9H4M3 255 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 APOBEC3GQ9HC16 384 aaKnown RBP13.12□□□□□ -0.31
SS18-225ENST00000585121 HPS4Q9NQG7 708 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 FAM49BQ9NUQ9 324 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 TMEM30AQ9NV96 361 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 ZSCAN32Q9NX65 697 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 CHMP5Q9NZZ3 219 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 HMGXB4Q9UGU5 601 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 MAN1B1Q9UKM7 699 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 PCDHGA2Q9Y5H1 932 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 CACNA1IQ9P0X4 2223 aa13.12□□□□□ -0.31
SS18-225ENST00000585121 NUP210Q8TEM1 1887 aaPredicted RBP13.12□□□□□ -0.31
SS18-225ENST00000585121 COL4A3Q01955 1670 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 BICDL2A1A5D9 508 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 LEFTY2O00292 366 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 SLC9A3R1O14745 358 aaPredicted RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 GADD45BO75293 160 aaPredicted RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 MBL2P11226 248 aaPredicted RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 ARSAP15289 507 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 ADORA2BP29275 332 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 SLC7A9P82251 487 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 KLHL10Q6JEL2 608 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 ZC3H3Q8IXZ2 948 aaKnown RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 C12orf29Q8N999 325 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 CYFIP2Q96F07 1278 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 CEP63Q96MT8 703 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 HNRNPABQ99729 332 aaKnown RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 FAM124BQ9H5Z6 455 aaPredicted RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 ECT2Q9H8V3 914 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 PRMT8Q9NR22 394 aaPredicted RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 CHORDC1Q9UHD1 332 aaPredicted RBP13.11□□□□□ -0.31
SS18-225ENST00000585121 WNT6Q9Y6F9 365 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 USP34Q70CQ2 3546 aa13.11□□□□□ -0.31
SS18-225ENST00000585121 TICRRQ7Z2Z1 1910 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 TRIM49BA6NDI0 452 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 CILPO75339 1184 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 NFATC1O95644 943 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 OAS1P00973 400 aaKnown RBP13.1□□□□□ -0.31
SS18-225ENST00000585121 PMS1P54277 932 aaKnown RBP13.1□□□□□ -0.31
SS18-225ENST00000585121 UBE2HP62256 183 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 YWHAEP62258 255 aaKnown RBP13.1□□□□□ -0.31
SS18-225ENST00000585121 CCDC40Q4G0X9 1142 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 HECTD3Q5T447 861 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 FILIP1Q7Z7B0 1213 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 KIAA1958Q8N8K9 716 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 SCAMP5Q8TAC9 235 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 HEXIM2Q96MH2 286 aaKnown RBP13.1□□□□□ -0.31
SS18-225ENST00000585121 SMOQ99835 787 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 NACA2Q9H009 215 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 CSNK1G1Q9HCP0 422 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 RBM12Q9NTZ6 932 aaKnown RBP13.1□□□□□ -0.31
SS18-225ENST00000585121 IL37Q9NZH6 218 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 CPQQ9Y646 472 aa13.1□□□□□ -0.31
SS18-225ENST00000585121 TRDMT1O14717 391 aaKnown RBP13.09□□□□□ -0.31
SS18-225ENST00000585121 TNFRSF10BO14763 440 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 DRD1P21728 446 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 GJA4P35212 333 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 SLC8A3P57103 927 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 CETN1Q12798 172 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 CCINQ13939 588 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 EML3Q32P44 896 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 TSSK4Q6SA08 328 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 RIN3Q8TB24 985 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 NELFBQ8WX92 580 aa13.09□□□□□ -0.31
SS18-225ENST00000585121 SEMA4DQ92854 862 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms