RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 SPATA17Q96L03 361 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 AK8Q96MA6 479 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 RNF38Q9H0F5 515 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 IKZF4Q9H2S9 585 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 BLOC1S4Q9NUP1 217 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 SMPD4Q9NXE4 827 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 GDAP2Q9NXN4 497 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 R3HCC1Q9Y3T6 440 aaKnown RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 KIF3AQ9Y496 699 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 GPSM3Q9Y4H4 160 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.15□□□□□ -0.3
TOP3A-215ENST00000583328 PCDHB9Q9Y5E1 797 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 CPQQ9Y646 472 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 ASPMQ8IZT6 3477 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 SPEGQ15772 3267 aa13.15□□□□□ -0.3
TOP3A-215ENST00000583328 LAMA1P25391 3075 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 TSC2P49815 1807 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 A0A0A0MRY4 1105 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ARHGAP33O14559 1287 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 GABRDO14764 452 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ZBTB24O43167 697 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ADAM23O75077 832 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ATP2C2O75185 946 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ADH1CP00326 375 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 CAPNS1P04632 268 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 SYPP08247 313 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ADH5P11766 374 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 CD59P13987 128 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 PPP3CCP48454 512 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 WNT7BP56706 349 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 USP46P62068 366 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ZNF33AQ06730 810 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 TRIP6Q15654 476 aaKnown RBP13.14□□□□□ -0.31
TOP3A-215ENST00000583328 SOWAHCQ53LP3 525 aaPredicted RBP13.14□□□□□ -0.31
TOP3A-215ENST00000583328 SCARA3Q6AZY7 606 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 DENND5BQ6ZUT9 1274 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ZNF720Q7Z2F6 126 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 KRI1Q8N9T8 703 aaKnown RBP13.14□□□□□ -0.31
TOP3A-215ENST00000583328 RAD54LQ92698 747 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 SAAL1Q96ER3 474 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 SYT15Q9BQS2 421 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ST6GALNAC4Q9H4F1 302 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 CAPN10Q9HC96 672 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 EHD2Q9NZN4 543 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 CFAP97Q9P2B7 532 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ITGA11Q9UKX5 1188 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 CDH9Q9ULB4 789 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 MYH11P35749 1972 aa13.14□□□□□ -0.31
TOP3A-215ENST00000583328 ZNF840PA6NDX5 716 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 SH3BP5O60239 455 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 PDGFRBP09619 1106 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 MBL2P11226 248 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 CHRM1P11229 460 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 PSMC1P62191 440 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 CYP27A1Q02318 531 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 MAPRE1Q15691 268 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 SOWAHAQ2M3V2 549 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 COL28A1Q2UY09 1125 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 DPH6Q7L8W6 267 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 TRMT11Q7Z4G4 463 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 BRSK2Q8IWQ3 736 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 ZNF513Q8N8E2 541 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 NOC3LQ8WTT2 800 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 MYLPFQ96A32 169 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 HVCN1Q96D96 273 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 INTS4Q96HW7 963 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 CEP295NLQ96MC4 621 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 CAMK1GQ96NX5 476 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 CCDC86Q9H6F5 360 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 DNAAF2Q9NVR5 837 aaKnown RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 RBAKQ9NYW8 714 aaPredicted RBP13.13□□□□□ -0.31
TOP3A-215ENST00000583328 TBC1D14Q9P2M4 693 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 EXOC7Q9UPT5 735 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 SMC3Q9UQE7 1217 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 DENND4CQ5VZ89 1909 aa13.13□□□□□ -0.31
TOP3A-215ENST00000583328 AKAP13Q12802 2813 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 TRIM66O15016 1216 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 LDHAP00338 332 aaKnown RBP13.12□□□□□ -0.31
TOP3A-215ENST00000583328 TMEM191BP0C7N4 346 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 GABRG2P18507 467 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 LMO2P25791 158 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 GJB2P29033 226 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 GAD2Q05329 585 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 MYO1EQ12965 1108 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 SLC14A1Q13336 389 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 PREPLQ4J6C6 727 aaPredicted RBP13.12□□□□□ -0.31
TOP3A-215ENST00000583328 LY6G5CQ5SRR4 150 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 TDRD10Q5VZ19 366 aaKnown RBP13.12□□□□□ -0.31
TOP3A-215ENST00000583328 BTBD8Q5XKL5 378 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 NUDT18Q6ZVK8 323 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 SFR1Q86XK3 245 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 DDX42Q86XP3 938 aaKnown RBP eCLIP13.12□□□□□ -0.31
TOP3A-215ENST00000583328 RGL4Q8IZJ4 473 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 NAT16Q8N8M0 369 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 PNPLA1Q8N8W4 532 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 TRIML1Q8N9V2 468 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 SPRYD3Q8NCJ5 442 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 ZSWIM2Q8NEG5 633 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 CXorf38Q8TB03 319 aa13.12□□□□□ -0.31
TOP3A-215ENST00000583328 KCNV2Q8TDN2 545 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms