RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 PCIF1Q9H4Z3 704 aa14.48□□□□□ -0.09
SS18-222ENST00000582792 INTS13Q9NVM9 706 aa14.48□□□□□ -0.09
SS18-222ENST00000582792 EHD2Q9NZN4 543 aa14.48□□□□□ -0.09
SS18-222ENST00000582792 ATP6V1DQ9Y5K8 247 aa14.48□□□□□ -0.09
SS18-222ENST00000582792 BAHCC1Q9P281 2608 aa14.48□□□□□ -0.09
SS18-222ENST00000582792 PTPRJQ12913 1337 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 FRMD3A2A2Y4 597 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 TMEM8BA6NDV4 472 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 ZNF840PA6NDX5 716 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 SLC9A3R1O14745 358 aaPredicted RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 TNFRSF10BO14763 440 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 TRIM66O15016 1216 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 KIAA0391O15091 583 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 TOP3BO95985 862 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 IDEP14735 1019 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 WARSP23381 471 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 ANXA13P27216 316 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 PPP3CCP48454 512 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 NASPP49321 788 aaPredicted RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 NOP14P78316 857 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 CYP27A1Q02318 531 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 LMAN2Q12907 356 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 PKP1Q13835 747 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 DHCR24Q15392 516 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 HSF5Q4G112 596 aaPredicted RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 LPCAT2Q7L5N7 544 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 TTC30AQ86WT1 665 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 SFTPA1Q8IWL2 248 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 ALLCQ8N6M5 410 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 TXNDC5Q8NBS9 432 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 WHAMMQ8TF30 809 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 PCED1BQ96HM7 432 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 SPACA7Q96KW9 195 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 PNKPQ96T60 521 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 POLMQ9NP87 494 aaPredicted RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 FBXO2Q9UK22 296 aaPredicted RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 ZDHHC9Q9Y397 364 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 SRPRBQ9Y5M8 271 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 CPQQ9Y646 472 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 CLIC4Q9Y696 253 aa14.47□□□□□ -0.09
SS18-222ENST00000582792 TNRC6BQ9UPQ9 1833 aaKnown RBP14.47□□□□□ -0.09
SS18-222ENST00000582792 FREM2Q5SZK8 3169 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 PKD1L2Q7Z442 2459 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 A0A0A0MRY4 1105 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 F8VP50 259 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 SGK1O00141 431 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 KAT7O95251 611 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 KLF8O95600 359 aaPredicted RBP14.46□□□□□ -0.09
SS18-222ENST00000582792 TNNC2P02585 160 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 APODP05090 189 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 PDGFRBP09619 1106 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 TIE1P35590 1138 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 TXLNAP40222 546 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 SLC6A11P48066 632 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 MESP2Q0VG99 397 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 SURF1Q15526 300 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 DUOXA2Q1HG44 320 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 UAP1L1Q3KQV9 507 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 TRIM61Q5EBN2 209 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 DEFB124Q8NES8 71 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 MYCBPAPQ8TBZ2 947 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 RLN3Q8WXF3 142 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 GATA6Q92908 595 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 C8orf48Q96LL4 319 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 FNBP1Q96RU3 617 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 SCNM1Q9BWG6 230 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 NUSAP1Q9BXS6 441 aaKnown RBP14.46□□□□□ -0.09
SS18-222ENST00000582792 PANK4Q9NVE7 773 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 SMPD4Q9NXE4 827 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 PLXND1Q9Y4D7 1925 aa14.46□□□□□ -0.09
SS18-222ENST00000582792 ASCC3Q8N3C0 2202 aaKnown RBP14.46□□□□□ -0.1
SS18-222ENST00000582792 ITPR1Q14643 2758 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 ZNF233A6NK53 670 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 MAP3K13O43283 966 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 PRPF6O94906 941 aaKnown RBP14.45□□□□□ -0.1
SS18-222ENST00000582792 YEATS4O95619 227 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 OAS1P00973 400 aaKnown RBP14.45□□□□□ -0.1
SS18-222ENST00000582792 PTGER3P43115 390 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 KIR2DL1P43626 348 aaPredicted RBP14.45□□□□□ -0.1
SS18-222ENST00000582792 SLC39A14Q15043 492 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 SPDYCQ5MJ68 293 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 EOGTQ5NDL2 527 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 RHBDF2Q6PJF5 856 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 C12orf40Q86WS4 652 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 DDX42Q86XP3 938 aaKnown RBP eCLIP14.45□□□□□ -0.1
SS18-222ENST00000582792 SYT12Q8IV01 421 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 TMEFF1Q8IYR6 380 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 CLIC6Q96NY7 704 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 USP28Q96RU2 1077 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 MMS19Q96T76 1030 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 ARHGEF4Q9NR80 690 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 TMEM74BQ9NUR3 256 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 BCCIPQ9P287 314 aaKnown RBP eCLIP14.45□□□□□ -0.1
SS18-222ENST00000582792 CFAP97Q9P2B7 532 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 MBD1Q9UIS9 605 aaPredicted RBP14.45□□□□□ -0.1
SS18-222ENST00000582792 CFAP45Q9UL16 551 aa14.45□□□□□ -0.1
SS18-222ENST00000582792 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.44□□□□□ -0.1
SS18-222ENST00000582792 SCAMP3O14828 347 aaKnown RBP14.44□□□□□ -0.1
SS18-222ENST00000582792 ADH1CP00326 375 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms