RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 DMC1Q14565 340 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 SURF1Q15526 300 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 SNRNP35Q16560 246 aaKnown RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 FBXO43Q4G163 708 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 MDH1BQ5I0G3 518 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 FAM26FQ5R3K3 315 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 TCEAL6Q6IPX3 200 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CC2D1AQ6P1N0 951 aaPredicted RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 C4orf50Q6ZRC1 276 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 DENND5BQ6ZUT9 1274 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 UNC13DQ70J99 1090 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CEP68Q76N32 757 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 C12orf40Q86WS4 652 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 NELFCDQ8IXH7 590 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 C12orf56Q8IXR9 622 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 ADGRG2Q8IZP9 1017 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 PHTF2Q8N3S3 785 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CPA6Q8N4T0 437 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 RDH13Q8NBN7 331 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 USP33Q8TEY7 942 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 ATP2A3Q93084 1043 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 TCEAL3Q969E4 200 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 WBP2Q969T9 261 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 DHX58Q96C10 678 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 TRIM44Q96DX7 344 aaPredicted RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 CEP295NLQ96MC4 621 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 B3GNT5Q9BYG0 378 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 ZNF518BQ9C0D4 1074 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 SDCBP2Q9H190 292 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 BLZF1Q9H2G9 400 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CUEDC2Q9H467 287 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 IL37Q9NZH6 218 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 EBF1Q9UH73 591 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 SLC8A2Q9UPR5 921 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 AKAP13Q12802 2813 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 PCDH15Q96QU1 1955 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 A0A0A0MRY4 1105 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 TULP1O00294 542 aaPredicted RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 SCAMP3O14828 347 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 POLR2DO15514 142 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 CUTAO60888 179 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 ATG13O75143 517 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 VNN1O95497 513 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 TNNC2P02585 160 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 C4BPAP04003 597 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 FAM163BP0C2L3 166 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 DLATP10515 647 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 PFKLP17858 780 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 PTPN1P18031 435 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 TNNI1P19237 187 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 PMLP29590 882 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 GRIK1P39086 918 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 SLC6A11P48066 632 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 CYP2J2P51589 502 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 CDH8P55286 799 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 ASIC1P78348 528 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 CYP27A1Q02318 531 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 TAF10Q12962 218 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 PKP1Q13835 747 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 KCNB1Q14721 858 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 WDR72Q3MJ13 1102 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 C1orf220Q5T0J3 134 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 N4BP2L1Q5TBK1 243 aaPredicted RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 TDRD10Q5VZ19 366 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 RESP18Q5W5W9 173 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 RHBDF2Q6PJF5 856 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 TMEM92Q6UXU6 159 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 FILIP1Q7Z7B0 1213 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 RASSF3Q86WH2 238 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 GRAMD1CQ8IYS0 662 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 KIAA1958Q8N8K9 716 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 XXYLT1Q8NBI6 393 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 B3GALNT2Q8NCR0 500 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 KIAA0895Q8NCT3 520 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 ZMIZ2Q8NF64 920 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 ANP32BQ92688 251 aaKnown RBP7.16□□□□□ -1.26
VPS53-213ENST00000572334 CCDC127Q96BQ5 260 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 KCNK16Q96T55 309 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 SMYD3Q9H7B4 428 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 VRTNQ9H8Y1 702 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 KIAA1586Q9HCI6 787 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 SLC39A2Q9NP94 309 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 DMAC2Q9NW81 257 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 TRPM5Q9NZQ8 1165 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 HCN2Q9UL51 889 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 PCDHA7Q9UN72 937 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 PCDHGA5Q9Y5G8 931 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 CPQQ9Y646 472 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 UBE4BO95155 1302 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 CKAP5Q14008 2032 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 NUMA1Q14980 2115 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 LAMA5O15230 3695 aa7.16□□□□□ -1.26
VPS53-213ENST00000572334 ZZEF1O43149 2961 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 CABIN1Q9Y6J0 2220 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 FAM92AA1XBS5 289 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 BCLAF3A2AJT9 711 aaKnown RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 LRRIQ3A6PVS8 624 aaPredicted RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 TRIM66O15016 1216 aa7.15□□□□□ -1.26
VPS53-213ENST00000572334 ACTN4O43707 911 aaKnown RBP7.15□□□□□ -1.26
VPS53-213ENST00000572334 GREM1O60565 184 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms