RNA–Protein interactions for RNA: ENST00000570828.5

CTDNEP1-205, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 986 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-205ENST00000570828 NUP210Q8TEM1 1887 aaPredicted RBP13.16□□□□□ -0.3
CTDNEP1-205ENST00000570828 ZNF292O60281 2723 aa13.16□□□□□ -0.3
CTDNEP1-205ENST00000570828 CACNA1IQ9P0X4 2223 aa13.16□□□□□ -0.3
CTDNEP1-205ENST00000570828 GPR179Q6PRD1 2367 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 C2orf78A6NCI8 922 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 GOLGA6L4A6NEF3 574 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 ZNF202O95125 648 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 VNN1O95497 513 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 ARSAP15289 507 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 RPL13P26373 211 aaKnown RBP13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 RAP1GAPP47736 663 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 CXCL12P48061 93 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 IFNAR2P48551 515 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 CDH8P55286 799 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 USP46P62068 366 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 NOP14P78316 857 aaKnown RBP13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 SATB1Q01826 763 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 USP4Q13107 963 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 ZNF77Q15935 545 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 SGSM1Q2NKQ1 1148 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 ZACNQ401N2 412 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 Q6ZS52 159 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 GUF1Q8N442 669 aaKnown RBP13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 CPA6Q8N4T0 437 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 ARL14EPQ8N8R7 260 aaPredicted RBP13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 RIN3Q8TB24 985 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 TAF4BQ92750 862 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 NELL1Q92832 810 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 ATP2A3Q93084 1043 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 EXOC4Q96A65 974 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 SLITRK1Q96PX8 696 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 SLC22A12Q96S37 553 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 CYP2S1Q96SQ9 504 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 MED10Q9BTT4 135 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 TTLL2Q9BWV7 592 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 IMPG2Q9BZV3 1241 aa13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 DUS2Q9NX74 493 aaKnown RBP13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 SMG5Q9UPR3 1016 aaKnown RBP13.15□□□□□ -0.3
CTDNEP1-205ENST00000570828 PATJQ8NI35 1801 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 CLDN5O00501 218 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 IKBKBO14920 756 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 MAPK13O15264 365 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 LILRB5O75023 590 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 ABL1P00519 1130 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 KRT13P13646 458 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 PFKLP17858 780 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 HDCP19113 662 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 TRIM21P19474 475 aaKnown RBP13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 PPP3CCP48454 512 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 VAMP7P51809 220 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 CACNA2D1P54289 1103 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 GRSF1Q12849 480 aaKnown RBP eCLIP13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 IFRD2Q12894 506 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 CCINQ13939 588 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 GAS6Q14393 721 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 NFIL3Q16649 462 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 WDR44Q5JSH3 913 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 INTS8Q75QN2 995 aaKnown RBP13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 SV2AQ7L0J3 742 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 FAM35AQ86V20 835 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 FAM186BQ8IYM0 893 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 SYNPOQ8N3V7 929 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 SUMF1Q8NBK3 374 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 SH3RF2Q8TEC5 729 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 OSCP1Q8WVF1 389 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 SECISBP2LQ93073 1101 aaKnown RBP13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 ELMO3Q96BJ8 720 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 B3GNT5Q9BYG0 378 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 EPC1Q9H2F5 836 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 GCNT4Q9P109 453 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 NCDNQ9UBB6 729 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 ARHGAP26Q9UNA1 814 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 WNT6Q9Y6F9 365 aa13.14□□□□□ -0.31
CTDNEP1-205ENST00000570828 ZNF840PA6NDX5 716 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 OTOL1A6NHN0 477 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 AKAP3O75969 853 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 RTN3O95197 1032 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 PAPSS2O95340 614 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 ASS1P00966 412 aaKnown RBP13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 HLA-DRAP01903 254 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TRIM49P0CI25 452 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TRIM49CP0CI26 452 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TDGF1P13385 188 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 NUCB2P80303 420 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TAF10Q12962 218 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TMEM196Q5HYL7 178 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 NUP93Q8N1F7 819 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 SMARCD1Q96GM5 515 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 SDCBP2Q9H190 292 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 ECT2Q9H8V3 914 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 DMAP1Q9NPF5 467 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 KRT82Q9NSB4 513 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TMEM30AQ9NV96 361 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 RMND1Q9NWS8 449 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 TSR3Q9UJK0 312 aaKnown RBP13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 OTOGLQ3ZCN5 2332 aa13.13□□□□□ -0.31
CTDNEP1-205ENST00000570828 SPTBN4Q9H254 2564 aa13.12□□□□□ -0.31
CTDNEP1-205ENST00000570828 TRDMT1O14717 391 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-205ENST00000570828 AP1G2O75843 785 aa13.12□□□□□ -0.31
CTDNEP1-205ENST00000570828 TCF3P15923 654 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms