RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NDUFV2P19404 249 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 MAOBP27338 520 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 CCT6AP40227 531 aaKnown RBP19.41■□□□□ 0.7
CLK3-227ENST00000570296 TAF6P49848 677 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 MAPK7Q13164 816 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 SUZ12Q15022 739 aaKnown RBP19.41■□□□□ 0.7
CLK3-227ENST00000570296 PTPRNQ16849 979 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 PREPLQ4J6C6 727 aaPredicted RBP19.41■□□□□ 0.7
CLK3-227ENST00000570296 JADE1Q6IE81 842 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 RHBDF2Q6PJF5 856 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 TMEM161BQ8NDZ6 487 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 SPIRE2Q8WWL2 714 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 TBC1D3BA6NDS4 549 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 MAPTP10636 758 aaKnown RBP19.4■□□□□ 0.7
CLK3-227ENST00000570296 CYP2F1P24903 491 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 NTSR1P30989 418 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 HLA-BQ31612 363 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 ENGASEQ8NFI3 743 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 LARP6Q9BRS8 491 aaKnown RBP19.4■□□□□ 0.7
CLK3-227ENST00000570296 ZSWIM6Q9HCJ5 1215 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 CD248Q9HCU0 757 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 KIAA1024Q9UPX6 916 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 DERAQ9Y315 318 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 COL12A1Q99715 3063 aa19.4■□□□□ 0.7
CLK3-227ENST00000570296 MEI4A8MW99 385 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 FAM189A1O60320 539 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 CDC45O75419 566 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 MCM7P33993 719 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 SMTNP53814 917 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 SLC7A9P82251 487 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 SRSF1Q07955 248 aaKnown RBP eCLIP19.39■□□□□ 0.69
CLK3-227ENST00000570296 C6orf118Q5T5N4 469 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 NUDT18Q6ZVK8 323 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 ZCCHC9Q8N567 271 aaKnown RBP19.39■□□□□ 0.69
CLK3-227ENST00000570296 SNIP1Q8TAD8 396 aaKnown RBP19.39■□□□□ 0.69
CLK3-227ENST00000570296 CYP46A1Q9Y6A2 500 aa19.39■□□□□ 0.69
CLK3-227ENST00000570296 BTBD18B2RXH4 712 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 UBR5O95071 2799 aaPredicted RBP19.38■□□□□ 0.69
CLK3-227ENST00000570296 WISP1O95388 367 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 OR52Z1P0C646 297 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 SEMG2Q02383 582 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 TMEM132DQ14C87 1099 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 TAF1BQ53T94 588 aaPredicted RBP19.38■□□□□ 0.69
CLK3-227ENST00000570296 DHRS13Q6UX07 377 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 FAM181AQ8N9Y4 354 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 IPO4Q8TEX9 1081 aaKnown RBP19.38■□□□□ 0.69
CLK3-227ENST00000570296 TIPINQ9BVW5 301 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 DDX19AQ9NUU7 478 aaKnown RBP19.38■□□□□ 0.69
CLK3-227ENST00000570296 ORC3Q9UBD5 711 aaPredicted RBP19.38■□□□□ 0.69
CLK3-227ENST00000570296 DNMT3LQ9UJW3 386 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 BTBD3Q9Y2F9 522 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 STARD13Q9Y3M8 1113 aa19.38■□□□□ 0.69
CLK3-227ENST00000570296 B8ZZF3 427 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 OGTO15294 1046 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 BCAT2O15382 392 aaPredicted RBP19.37■□□□□ 0.69
CLK3-227ENST00000570296 CD6P30203 668 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 HNF1BP35680 557 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 BNC1Q01954 994 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 PDIA5Q14554 519 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 CFAP221Q4G0U5 840 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 C10orf76Q5T2E6 689 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 SDE2Q6IQ49 451 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 ETFBKMTQ8IXQ9 262 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 FAM212AQ96EL1 285 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 BICD1Q96G01 975 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 ACBD6Q9BR61 282 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 RUSC1Q9BVN2 902 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 HCN2Q9UL51 889 aa19.37■□□□□ 0.69
CLK3-227ENST00000570296 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLK3-227ENST00000570296 KPNA7A9QM74 516 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 PLS3P13797 630 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 WASP42768 502 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 GRK6P43250 576 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 GAD2Q05329 585 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 ORC2Q13416 577 aaPredicted RBP19.36■□□□□ 0.69
CLK3-227ENST00000570296 RINT1Q6NUQ1 792 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 C1orf186Q6ZWK4 172 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 DDX42Q86XP3 938 aaKnown RBP eCLIP19.36■□□□□ 0.69
CLK3-227ENST00000570296 MIB1Q86YT6 1006 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 DIS3L2Q8IYB7 885 aaKnown RBP19.36■□□□□ 0.69
CLK3-227ENST00000570296 TERB1Q8NA31 727 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 CADM4Q8NFZ8 388 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 MIR1-1HGQ9H1L0 117 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 CD93Q9NPY3 652 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 TRPM5Q9NZQ8 1165 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 TBC1D14Q9P2M4 693 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 DEC1Q9P2X7 70 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 DNM3Q9UQ16 869 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 CPQQ9Y646 472 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 AK5Q9Y6K8 562 aa19.36■□□□□ 0.69
CLK3-227ENST00000570296 COL5A1P20908 1838 aaPredicted RBP19.35■□□□□ 0.69
CLK3-227ENST00000570296 SFI1A8K8P3 1242 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 TULP3O75386 442 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 OLFM2O95897 454 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 NTRK1P04629 796 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 NCAM1P13591 858 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 GUCY2CP25092 1073 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 CDC25AP30304 524 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 RHDQ02161 417 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 TLE3Q04726 772 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms