RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 CHRDQ9H2X0 955 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 HPS4Q9NQG7 708 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 KRT82Q9NSB4 513 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 COMMD8Q9NX08 183 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 IL37Q9NZH6 218 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 COQ4Q9Y3A0 265 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 CACNA1HO95180 2353 aa21.53■■□□□ 1.04
CLK3-225ENST00000569063 PPP1R3GB7ZBB8 358 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 CILPO75339 1184 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 OLFM2O95897 454 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 USP4Q13107 963 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 MTF1Q14872 753 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 PDGFRLQ15198 375 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 CBWD6Q4V339 395 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 DCAF17Q5H9S7 520 aaPredicted RBP21.52■■□□□ 1.04
CLK3-225ENST00000569063 CBWD3Q5JTY5 395 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 CBWD5Q5RIA9 395 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 TCERG1LQ5VWI1 586 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 TXNDC11Q6PKC3 985 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 PDZD8Q8NEN9 1154 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 ZMIZ2Q8NF64 920 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 HNRNPABQ99729 332 aaKnown RBP21.52■■□□□ 1.04
CLK3-225ENST00000569063 SMOQ99835 787 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 DUSP9Q99956 384 aaKnown RBP21.52■■□□□ 1.04
CLK3-225ENST00000569063 EBF3Q9H4W6 596 aa21.52■■□□□ 1.04
CLK3-225ENST00000569063 FAM124BQ9H5Z6 455 aaPredicted RBP21.52■■□□□ 1.04
CLK3-225ENST00000569063 METTL14Q9HCE5 456 aaKnown RBP21.52■■□□□ 1.04
CLK3-225ENST00000569063 ARMCX3Q9UH62 379 aaPredicted RBP21.52■■□□□ 1.04
CLK3-225ENST00000569063 PATJQ8NI35 1801 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 ZNF638Q14966 1978 aaKnown RBP21.51■■□□□ 1.03
CLK3-225ENST00000569063 FAM92AA1XBS5 289 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 BEST1O76090 585 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 OAS1P00973 400 aaKnown RBP21.51■■□□□ 1.03
CLK3-225ENST00000569063 CD58P19256 250 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 SLC5A3P53794 718 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 SLC7A9P82251 487 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 MTAPQ13126 283 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 WDR44Q5JSH3 913 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 SNX30Q5VWJ9 437 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 TRIM68Q6AZZ1 485 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 TTI2Q6NXR4 508 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 FILIP1Q7Z7B0 1213 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 TTC39CQ8N584 583 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 SCAMP5Q8TAC9 235 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 SH3RF2Q8TEC5 729 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 OSCP1Q8WVF1 389 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 SLC35C1Q96A29 364 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 CYFIP2Q96F07 1278 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 DNAI2Q9GZS0 605 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 RNF38Q9H0F5 515 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 FAM49BQ9NUQ9 324 aa21.51■■□□□ 1.03
CLK3-225ENST00000569063 OTOL1A6NHN0 477 aaPredicted RBP21.5■■□□□ 1.03
CLK3-225ENST00000569063 GFRA3O60609 400 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 ARSAP15289 507 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 ZXDBP98169 803 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 IFRD2Q12894 506 aaPredicted RBP21.5■■□□□ 1.03
CLK3-225ENST00000569063 LRRC32Q14392 662 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 KIAA1958Q8N8K9 716 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 NELFBQ8WX92 580 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 NKD2Q969F2 451 aaPredicted RBP21.5■■□□□ 1.03
CLK3-225ENST00000569063 FBXO32Q969P5 355 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 SEMA4AQ9H3S1 761 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 PRMT8Q9NR22 394 aaPredicted RBP21.5■■□□□ 1.03
CLK3-225ENST00000569063 DUS2Q9NX74 493 aaKnown RBP21.5■■□□□ 1.03
CLK3-225ENST00000569063 USP34Q70CQ2 3546 aa21.5■■□□□ 1.03
CLK3-225ENST00000569063 MYO15AQ9UKN7 3530 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 BICDL2A1A5D9 508 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 BIN1O00499 593 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 ABL1P00519 1130 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 FAM200BP0CF97 657 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 MAP3K7CLP57077 242 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 PON2Q15165 354 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 DGKKQ5KSL6 1271 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 KLHL10Q6JEL2 608 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 ZC3H14Q6PJT7 736 aaKnown RBP21.49■■□□□ 1.03
CLK3-225ENST00000569063 TATDN2Q93075 761 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 FBXO44Q9H4M3 255 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 CISHQ9NSE2 258 aa21.49■■□□□ 1.03
CLK3-225ENST00000569063 F5P12259 2224 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 VPS13AQ96RL7 3174 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 PRR23AA6NEV1 266 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 LEFTY2O00292 366 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 ZDHHC11BP0C7U3 371 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 ADORA2BP29275 332 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 ANP32AP39687 249 aaKnown RBP21.48■■□□□ 1.03
CLK3-225ENST00000569063 AMPD2Q01433 879 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 CSTF1Q05048 431 aaKnown RBP21.48■■□□□ 1.03
CLK3-225ENST00000569063 CCINQ13939 588 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 EML3Q32P44 896 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 CLEC20AQ6ZU45 233 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 ASCL5Q7RTU5 278 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 TRIML1Q8N9V2 468 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 NELL1Q92832 810 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 ATP2A3Q93084 1043 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 CHFRQ96EP1 664 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 ECT2Q9H8V3 914 aa21.48■■□□□ 1.03
CLK3-225ENST00000569063 CHORDC1Q9UHD1 332 aaPredicted RBP21.48■■□□□ 1.03
CLK3-225ENST00000569063 HHLA1C9JL84 531 aa21.47■■□□□ 1.03
CLK3-225ENST00000569063 TRDMT1O14717 391 aaKnown RBP21.47■■□□□ 1.03
CLK3-225ENST00000569063 PMM2O15305 246 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms