RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 BMP6P22004 513 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 SLC7A9P82251 487 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 CETN1Q12798 172 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 FZD5Q13467 585 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 LRRC32Q14392 662 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 MTF1Q14872 753 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 FBXO32Q969P5 355 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 SLC35C1Q96A29 364 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 EXOC4Q96A65 974 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 SLC22A12Q96S37 553 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 CHRDQ9H2X0 955 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 SEMA4AQ9H3S1 761 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 FBXO44Q9H4M3 255 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 FAM86C1Q9NVL1 165 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 KIAA1468Q9P260 1216 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 BIN1O00499 593 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 TNFRSF10BO14763 440 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 FGFR1OPO95684 399 aaKnown RBP19.82■□□□□ 0.76
CLN3-227ENST00000567495 CD58P19256 250 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 SLC5A3P53794 718 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 YWHAEP62258 255 aaKnown RBP19.82■□□□□ 0.76
CLN3-227ENST00000567495 TNK2Q07912 1038 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 USP4Q13107 963 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 PAK1Q13153 545 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 RUNX3Q13761 415 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 ZNF77Q15935 545 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 ZNF528Q3MIS6 628 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 CCDC40Q4G0X9 1142 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 DGKKQ5KSL6 1271 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 SNX30Q5VWJ9 437 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 ZC3H14Q6PJT7 736 aaKnown RBP19.82■□□□□ 0.76
CLN3-227ENST00000567495 C12orf29Q8N999 325 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 SH3RF2Q8TEC5 729 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 OSCP1Q8WVF1 389 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 CYFIP2Q96F07 1278 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 LMAN1LQ9HAT1 526 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 PNPLA8Q9NP80 782 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 FAM49BQ9NUQ9 324 aa19.82■□□□□ 0.76
CLN3-227ENST00000567495 FAM92AA1XBS5 289 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 OLFM2O95897 454 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 ABL1P00519 1130 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 OAS1P00973 400 aaKnown RBP19.81■□□□□ 0.76
CLN3-227ENST00000567495 TUBP50607 506 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 ORC1Q13415 861 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 PPP2R5DQ14738 602 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 CBWD6Q4V339 395 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 CBWD3Q5JTY5 395 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 CBWD5Q5RIA9 395 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 DDX42Q86XP3 938 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-227ENST00000567495 SYNPOQ8N3V7 929 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 CPA6Q8N4T0 437 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 WHAMMQ8TF30 809 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 ATP2A3Q93084 1043 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 TWNKQ96RR1 684 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 SMOQ99835 787 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 DUSP9Q99956 384 aaKnown RBP19.81■□□□□ 0.76
CLN3-227ENST00000567495 CISHQ9NSE2 258 aa19.81■□□□□ 0.76
CLN3-227ENST00000567495 DUS2Q9NX74 493 aaKnown RBP19.81■□□□□ 0.76
CLN3-227ENST00000567495 P4HA2O15460 535 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 SP9P0CG40 484 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 CHRNB1P11230 501 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 TBXAS1P24557 533 aaPredicted RBP19.8■□□□□ 0.76
CLN3-227ENST00000567495 IFNAR2P48551 515 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 MAP3K7CLP57077 242 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 IFRD2Q12894 506 aaPredicted RBP19.8■□□□□ 0.76
CLN3-227ENST00000567495 NR1H3Q13133 447 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 SCAMP5Q8TAC9 235 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 HEXIM2Q96MH2 286 aaKnown RBP19.8■□□□□ 0.76
CLN3-227ENST00000567495 PHOX2BQ99453 314 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 EBF3Q9H4W6 596 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 HPS4Q9NQG7 708 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 CTNND2Q9UQB3 1225 aa19.8■□□□□ 0.76
CLN3-227ENST00000567495 SLC9A3R1O14745 358 aaPredicted RBP19.79■□□□□ 0.76
CLN3-227ENST00000567495 ADORA2BP29275 332 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 SOX9P48436 509 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 FMO5P49326 533 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 MTAPQ13126 283 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 CAMK4Q16566 473 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 HECTD3Q5T447 861 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 CLEC17AQ6ZS10 378 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 ZMIZ2Q8NF64 920 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 NKD2Q969F2 451 aaPredicted RBP19.79■□□□□ 0.76
CLN3-227ENST00000567495 TMEM176AQ96HP8 235 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 DUSP16Q9BY84 665 aa19.79■□□□□ 0.76
CLN3-227ENST00000567495 FAM126AQ9BYI3 521 aaPredicted RBP19.79■□□□□ 0.76
CLN3-227ENST00000567495 NUP210Q8TEM1 1887 aaPredicted RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 ZFHX2Q9C0A1 2572 aaPredicted RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 LEFTY2O00292 366 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 ZDHHC11BP0C7U3 371 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 CCR3P51677 355 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 MARSP56192 900 aaKnown RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 SLC8A3P57103 927 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 GRSF1Q12849 480 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-227ENST00000567495 CUL2Q13617 745 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 TXNDC11Q6PKC3 985 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 CLEC20AQ6ZU45 233 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 MAML2Q8IZL2 1156 aaPredicted RBP19.78■□□□□ 0.76
CLN3-227ENST00000567495 SPEM1Q8N4L4 309 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 MLKLQ8NB16 471 aa19.78■□□□□ 0.76
CLN3-227ENST00000567495 TTC16Q8NEE8 873 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms