RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 NXF1Q9UBU9 619 aaKnown RBP20.26■□□□□ 0.83
VPS35-202ENST00000561713 TRAV19A0A0A6YYK7 116 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 A0A1B0GVL5 298 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 EXOC3O60645 756 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 APBB3O95704 486 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 PFKFB1P16118 471 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 GRIK1P39086 918 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 MAGEA11P43364 429 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 IFRD2Q12894 506 aaPredicted RBP20.25■□□□□ 0.83
VPS35-202ENST00000561713 DMC1Q14565 340 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 ELF2Q15723 593 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 KNOP1Q1ED39 458 aaKnown RBP20.25■□□□□ 0.83
VPS35-202ENST00000561713 WDR72Q3MJ13 1102 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 DPH6Q7L8W6 267 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 OSCP1Q8WVF1 389 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 EDEM2Q9BV94 578 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 ZNF518BQ9C0D4 1074 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 SNX25Q9H3E2 840 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 EXOC1Q9NV70 894 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 EBF1Q9UH73 591 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 INVSQ9Y283 1065 aa20.25■□□□□ 0.83
VPS35-202ENST00000561713 C4orf47A7E2U8 309 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 F8VP50 259 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 CLDN5O00501 218 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 SCAMP3O14828 347 aaKnown RBP20.24■□□□□ 0.83
VPS35-202ENST00000561713 GIPC1O14908 333 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 RHOBTB1O94844 696 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 CAVIN2O95810 425 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 FAM160A1Q05DH4 1040 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 STK4Q13043 487 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 PSMD2Q13200 908 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 BIRC3Q13489 604 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 TRPC3Q13507 836 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 KCNB1Q14721 858 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 TDRD10Q5VZ19 366 aaKnown RBP20.24■□□□□ 0.83
VPS35-202ENST00000561713 MYCBPAPQ8TBZ2 947 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 CD101Q93033 1021 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 PAGE5Q96GU1 130 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 XYLT2Q9H1B5 865 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 GCNT4Q9P109 453 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 RCOR1Q9UKL0 485 aa20.24■□□□□ 0.83
VPS35-202ENST00000561713 PVALEFA0A1B0GWK0 134 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 BCLAF3A2AJT9 711 aaKnown RBP20.23■□□□□ 0.83
VPS35-202ENST00000561713 LRRIQ3A6PVS8 624 aaPredicted RBP20.23■□□□□ 0.83
VPS35-202ENST00000561713 USP17L7P0C7H9 530 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 PRR29P0C7W0 189 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 ANXA13P27216 316 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 IFNAR2P48551 515 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 EML3Q32P44 896 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 KMT5BQ4FZB7 885 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 C12orf56Q8IXR9 622 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 SH3RF2Q8TEC5 729 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 ATP2A3Q93084 1043 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 EXOC4Q96A65 974 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 CFAP45Q9UL16 551 aa20.23■□□□□ 0.83
VPS35-202ENST00000561713 PHACTR2O75167 634 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 SLFN14P0C7P3 912 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 GBP1P32455 592 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 GNL1P36915 607 aaPredicted RBP20.22■□□□□ 0.83
VPS35-202ENST00000561713 NOVA1P51513 510 aaKnown RBP20.22■□□□□ 0.83
VPS35-202ENST00000561713 DGKEP52429 567 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 CDH8P55286 799 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 ORC1Q13415 861 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 MAPRE1Q15691 268 aaKnown RBP20.22■□□□□ 0.83
VPS35-202ENST00000561713 ZNF699Q32M78 642 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 VSTM1Q6UX27 236 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 DENND5BQ6ZUT9 1274 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 ACDQ96AP0 544 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 SDCBP2Q9H190 292 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 LINC00597Q9H2U6 94 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.22■□□□□ 0.83
VPS35-202ENST00000561713 ZDHHC9Q9Y397 364 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 CACNA1GO43497 2377 aa20.22■□□□□ 0.83
VPS35-202ENST00000561713 LNP1A1A4G5 178 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 ANTXRLA6NF34 631 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 A8MXQ7 604 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 TRIM66O15016 1216 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 TACC1O75410 805 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 PROS1P07225 676 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 PTPN1P18031 435 aaKnown RBP20.21■□□□□ 0.83
VPS35-202ENST00000561713 SNRPFP62306 86 aaKnown RBP20.21■□□□□ 0.83
VPS35-202ENST00000561713 DLG4P78352 724 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 ZXDBP98169 803 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 ATL3Q6DD88 541 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 FSIP1Q8NA03 581 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 B3GALNT2Q8NCR0 500 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 SPATA17Q96L03 361 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 B3GNT5Q9BYG0 378 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 TPSD1Q9BZJ3 242 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 SMPD4Q9NXE4 827 aa20.21■□□□□ 0.83
VPS35-202ENST00000561713 C1QTNF9BB2RNN3 333 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 VNN1O95497 513 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 ABL1P00519 1130 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 C1QTNF9P0C862 333 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 HDCP19113 662 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 TSTD1Q8NFU3 115 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 SPATA32Q96LK8 384 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 KCTD10Q9H3F6 313 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 TRPM5Q9NZQ8 1165 aa20.2■□□□□ 0.82
VPS35-202ENST00000561713 HMGXB4Q9UGU5 601 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms