RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 PIGZQ86VD9 579 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 GRK7Q8WTQ7 553 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 ACBD6Q9BR61 282 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 C11orf84Q9BUA3 381 aaPredicted RBP13.54□□□□□ -0.24
SNX1-211ENST00000560829 B3GNT5Q9BYG0 378 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 FAM129AQ9BZQ8 928 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 NEUROG2Q9H2A3 272 aa13.54□□□□□ -0.24
SNX1-211ENST00000560829 ELAC1Q9H777 363 aaKnown RBP13.54□□□□□ -0.24
SNX1-211ENST00000560829 ARHGEF37A1IGU5 675 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 TMEM189-UBE2V1I3L0A0 370 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 NBNO60934 754 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ENDOD1O94919 500 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 TYMPP19971 482 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 KDELR1P24390 212 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 SDC4P31431 198 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 HSPA9P38646 679 aaKnown RBP13.53□□□□□ -0.24
SNX1-211ENST00000560829 KCNJ1P48048 391 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ADCY2Q08462 1091 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 MTFR1Q15390 333 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 CCDC142Q17RM4 750 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 PLEKHG4Q58EX7 1191 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ODF2Q5BJF6 829 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 CLLU1OSQ5K130 101 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ZFYVE27Q5T4F4 411 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ATL2Q8NHH9 583 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 MYCBPAPQ8TBZ2 947 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ATG4AQ8WYN0 398 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 RSPH1Q8WYR4 309 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 CENPIQ92674 756 aaPredicted RBP13.53□□□□□ -0.24
SNX1-211ENST00000560829 SUSD3Q96L08 255 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 DEFB118Q96PH6 123 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 RTP3Q9BQQ7 232 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 BEGAINQ9BUH8 593 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 DPH5Q9H2P9 285 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ZWILCHQ9H900 591 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ZDHHC18Q9NUE0 388 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 TMEM161AQ9NX61 479 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 KANSL3Q9P2N6 904 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 TIMM13Q9Y5L4 95 aaPredicted RBP13.53□□□□□ -0.24
SNX1-211ENST00000560829 GRAP2O75791 330 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 FAM200BP0CF97 657 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 KRT10P13645 584 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 DESP17661 470 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 BRCC3P46736 316 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 C15orf59Q2T9L4 293 aaPredicted RBP13.53□□□□□ -0.24
SNX1-211ENST00000560829 NOMO2Q5JPE7 1267 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 EFHC1Q5JVL4 640 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 ZDHHC24Q6UX98 284 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 FAM35AQ86V20 835 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 METTL23Q86XA0 190 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 TSEN2Q8NCE0 465 aaKnown RBP13.53□□□□□ -0.24
SNX1-211ENST00000560829 CFAP57Q96MR6 1250 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 PEBP4Q96S96 227 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 TBCBQ99426 244 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 FRMD8P1Q9BZ68 369 aaPredicted RBP13.53□□□□□ -0.24
SNX1-211ENST00000560829 GRHL1Q9NZI5 618 aa13.53□□□□□ -0.24
SNX1-211ENST00000560829 MYBPHLA2RUH7 354 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 CLDN5O00501 218 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 BEST1O76090 585 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 CCL5P13501 91 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 LCP1P13796 627 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 RPL21P46778 160 aaKnown RBP13.52□□□□□ -0.25
SNX1-211ENST00000560829 ARSEP51690 589 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 ADCY1Q08828 1119 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 PTK6Q13882 451 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 SMTNL2Q2TAL5 461 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 BOLA3Q53S33 107 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 KCNT1Q5JUK3 1230 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 SH3PXD2AQ5TCZ1 1133 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 ALS2CLQ60I27 953 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 FAM171BQ6P995 826 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 BBS12Q6ZW61 710 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 VSIG1Q86XK7 387 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 URGCPQ8TCY9 931 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 CLEC4CQ8WTT0 213 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 TEKT4Q8WW24 435 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 APBB2Q92870 758 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 ACSF2Q96CM8 615 aaPredicted RBP13.52□□□□□ -0.25
SNX1-211ENST00000560829 PCED1BQ96HM7 432 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 PKMYT1Q99640 499 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 DDX23Q9BUQ8 820 aaKnown RBP13.52□□□□□ -0.25
SNX1-211ENST00000560829 MED4Q9NPJ6 270 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 PCSK1NQ9UHG2 260 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 SNX24Q9Y343 169 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 NEU2Q9Y3R4 380 aa13.52□□□□□ -0.25
SNX1-211ENST00000560829 ENPP3O14638 875 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 LIASO43766 372 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 PRPSAP2O60256 369 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 HSF2BPO75031 334 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 DDHD2O94830 711 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 GAS8O95995 478 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 IBSPP21815 317 aaPredicted RBP13.51□□□□□ -0.25
SNX1-211ENST00000560829 CBX1P83916 185 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 LMNB2Q03252 620 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 SNX1Q13596 522 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 INTS6LQ5JSJ4 861 aaKnown RBP13.51□□□□□ -0.25
SNX1-211ENST00000560829 ANKRD33Q7Z3H0 272 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 COLGALT2Q8IYK4 626 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 IQCKQ8N0W5 287 aa13.51□□□□□ -0.25
SNX1-211ENST00000560829 DBF4BQ8NFT6 615 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms