RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 CLEC20AQ6ZU45 233 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 TRIM59Q8IWR1 403 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 CYFIP2Q96F07 1278 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 FAM83CQ9BQN1 747 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 SRRTQ9BXP5 876 aaKnown RBP21.73■■□□□ 1.07
VTI1B-205ENST00000555543 OSBPL6Q9BZF3 934 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 IL37Q9NZH6 218 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 NDRG2Q9UN36 371 aaKnown RBP21.73■■□□□ 1.07
VTI1B-205ENST00000555543 VPS13AQ96RL7 3174 aa21.73■■□□□ 1.07
VTI1B-205ENST00000555543 RTN3O95197 1032 aaPredicted RBP21.72■■□□□ 1.07
VTI1B-205ENST00000555543 FAM200BP0CF97 657 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 YWHAQP27348 245 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 ZXDBP98169 803 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 PLCB2Q00722 1185 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 LRMPQ12912 555 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 FZD5Q13467 585 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 CUL2Q13617 745 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 TRIM68Q6AZZ1 485 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 TXNDC11Q6PKC3 985 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 GPRIN1Q7Z2K8 1008 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 SLC4A11Q8NBS3 891 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 TTC16Q8NEE8 873 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 FBXO32Q969P5 355 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 SLITRK1Q96PX8 696 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 HPS4Q9NQG7 708 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 GKN1Q9NS71 199 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 THG1LQ9NWX6 298 aaKnown RBP21.72■■□□□ 1.07
VTI1B-205ENST00000555543 RWDD2AQ9UIY3 292 aa21.72■■□□□ 1.07
VTI1B-205ENST00000555543 HHLA1C9JL84 531 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 MAN2B1O00754 1011 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 PMM2O15305 246 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 ABL1P00519 1130 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 OAS1P00973 400 aaKnown RBP21.71■■□□□ 1.07
VTI1B-205ENST00000555543 HDCP19113 662 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 PPP3CCP48454 512 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 KPNA1P52294 538 aaPredicted RBP21.71■■□□□ 1.07
VTI1B-205ENST00000555543 RAD23BP54727 409 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 MARSP56192 900 aaKnown RBP21.71■■□□□ 1.07
VTI1B-205ENST00000555543 MTF1Q14872 753 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 ANGPT1Q15389 498 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 PPP1R26Q5T8A7 1209 aaPredicted RBP21.71■■□□□ 1.07
VTI1B-205ENST00000555543 SH3RF2Q8TEC5 729 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 FAM3CQ92520 227 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 JAKMIP2Q96AA8 810 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 CLDN23Q96B33 292 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 RNF38Q9H0F5 515 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 ARHGAP26Q9UNA1 814 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 MRPS17Q9Y2R5 130 aaKnown RBP21.71■■□□□ 1.07
VTI1B-205ENST00000555543 PIEZO1Q92508 2521 aa21.71■■□□□ 1.07
VTI1B-205ENST00000555543 FAM92AA1XBS5 289 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 OTOL1A6NHN0 477 aaPredicted RBP21.7■■□□□ 1.06
VTI1B-205ENST00000555543 SPECC1L-ADORA2AF8WAN1 911 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 OLFM2O95897 454 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 ARSAP15289 507 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 TRIM21P19474 475 aaKnown RBP21.7■■□□□ 1.06
VTI1B-205ENST00000555543 CTHP32929 405 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 PGFP49763 221 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 MLLT6P55198 1093 aaPredicted RBP21.7■■□□□ 1.06
VTI1B-205ENST00000555543 UBR7Q8N806 425 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 LMO3Q8TAP4 145 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 ATOH1Q92858 354 aaPredicted RBP21.7■■□□□ 1.06
VTI1B-205ENST00000555543 TMEM176AQ96HP8 235 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 HEXIM2Q96MH2 286 aaKnown RBP21.7■■□□□ 1.06
VTI1B-205ENST00000555543 IPO9Q96P70 1041 aaKnown RBP21.7■■□□□ 1.06
VTI1B-205ENST00000555543 NELL2Q99435 816 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 NUP62CLQ9H1M0 184 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 EBF3Q9H4W6 596 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 GMIPQ9P107 970 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 MYH10P35580 1976 aa21.7■■□□□ 1.06
VTI1B-205ENST00000555543 GNA14O95837 355 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 PFKLP17858 780 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 KCNH2Q12809 1159 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 ITPRIPL2Q3MIP1 535 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 TTC39CQ8N584 583 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 PDZD8Q8NEN9 1154 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 OVCA2Q8WZ82 227 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 CHFRQ96EP1 664 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 FAM124BQ9H5Z6 455 aaPredicted RBP21.69■■□□□ 1.06
VTI1B-205ENST00000555543 C8orf33Q9H7E9 229 aaPredicted RBP21.69■■□□□ 1.06
VTI1B-205ENST00000555543 CHORDC1Q9UHD1 332 aaPredicted RBP21.69■■□□□ 1.06
VTI1B-205ENST00000555543 MYO16Q9Y6X6 1858 aa21.69■■□□□ 1.06
VTI1B-205ENST00000555543 ZDHHC11BP0C7U3 371 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 TCF3P15923 654 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 PDE6CP51160 858 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 SLC7A9P82251 487 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 DPCR1Q3MIW9 517 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 CC2D1AQ6P1N0 951 aaPredicted RBP21.68■■□□□ 1.06
VTI1B-205ENST00000555543 RALGPS2Q86X27 583 aaPredicted RBP21.68■■□□□ 1.06
VTI1B-205ENST00000555543 MLKLQ8NB16 471 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 GPT2Q8TD30 523 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 KAT5Q92993 513 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 MSANTD3Q96H12 275 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 SMPD4Q9NXE4 827 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.68■■□□□ 1.06
VTI1B-205ENST00000555543 CPQQ9Y646 472 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 WNT6Q9Y6F9 365 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 USP34Q70CQ2 3546 aa21.68■■□□□ 1.06
VTI1B-205ENST00000555543 CACNA1IQ9P0X4 2223 aa21.67■■□□□ 1.06
VTI1B-205ENST00000555543 LEFTY2O00292 366 aa21.67■■□□□ 1.06
VTI1B-205ENST00000555543 P4HA2O15460 535 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms