RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 LMBRD2Q68DH5 695 aaPredicted RBP12.64□□□□□ -0.39
CKAP4-202ENST00000552828 CNNM4Q6P4Q7 775 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 CBWD2Q8IUF1 395 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 WDR49Q8IV35 697 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 ADGRG2Q8IZP9 1017 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 TSTD1Q8NFU3 115 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 CNOT6LQ96LI5 555 aaKnown RBP12.64□□□□□ -0.39
CKAP4-202ENST00000552828 C8orf48Q96LL4 319 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 C7orf25Q9BPX7 421 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 KIAA1586Q9HCI6 787 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 TRPM5Q9NZQ8 1165 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 SERTAD1Q9UHV2 236 aa12.64□□□□□ -0.39
CKAP4-202ENST00000552828 LNP1A1A4G5 178 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 TRIM66O15016 1216 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 ACTN4O43707 911 aaKnown RBP12.63□□□□□ -0.39
CKAP4-202ENST00000552828 TACC1O75410 805 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 TNNC2P02585 160 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 GRIK1P39086 918 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 AFMP43652 599 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 DGKEP52429 567 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 PSMC1P62191 440 aaKnown RBP12.63□□□□□ -0.39
CKAP4-202ENST00000552828 ASIC1P78348 528 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 MRPS21P82921 87 aaKnown RBP12.63□□□□□ -0.39
CKAP4-202ENST00000552828 PSMD2Q13200 908 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 TRAPPC11Q7Z392 1133 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 PIAS4Q8N2W9 510 aaPredicted RBP12.63□□□□□ -0.39
CKAP4-202ENST00000552828 OLIG1Q8TAK6 271 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 PAGE5Q96GU1 130 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 PCED1BQ96HM7 432 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 EDEM2Q9BV94 578 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 RNF38Q9H0F5 515 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 HSPBP1Q9NZL4 362 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 MMP17Q9ULZ9 603 aa12.63□□□□□ -0.39
CKAP4-202ENST00000552828 R3HCC1Q9Y3T6 440 aaKnown RBP12.63□□□□□ -0.39
CKAP4-202ENST00000552828 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 C4orf47A7E2U8 309 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 TULP1O00294 542 aaPredicted RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 SLC9A3R1O14745 358 aaPredicted RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 ZNF202O95125 648 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 OAS1P00973 400 aaKnown RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 CYP17A1P05093 508 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 PDGFRBP09619 1106 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 ANXA13P27216 316 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 GNL1P36915 607 aaPredicted RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 EIF2DP41214 584 aaKnown RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 CYP27A1Q02318 531 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 CRY1Q16526 586 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 HSF5Q4G112 596 aaPredicted RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 C2orf27AQ580R0 203 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 STXBP4Q6ZWJ1 553 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 EPM2AIP1Q7L775 607 aaPredicted RBP12.62□□□□□ -0.39
CKAP4-202ENST00000552828 FILIP1Q7Z7B0 1213 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 GLIS3Q8NEA6 775 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 TTC16Q8NEE8 873 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 CCDC34Q96HJ3 373 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 BLZF1Q9H2G9 400 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 GOLPH3LQ9H4A5 285 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 WASF3Q9UPY6 502 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 NME7Q9Y5B8 376 aa12.62□□□□□ -0.39
CKAP4-202ENST00000552828 EML5Q05BV3 1969 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 PVALEFA0A1B0GWK0 134 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 ANTXRLA6NF34 631 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 F8VP50 259 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 KHNYNO15037 678 aaKnown RBP12.61□□□□□ -0.39
CKAP4-202ENST00000552828 EIF3DO15371 548 aaKnown RBP eCLIP12.61□□□□□ -0.39
CKAP4-202ENST00000552828 STAU1O95793 577 aaKnown RBP12.61□□□□□ -0.39
CKAP4-202ENST00000552828 CST3P01034 146 aaPredicted RBP12.61□□□□□ -0.39
CKAP4-202ENST00000552828 MYL1P05976 194 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 GBP1P32455 592 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 CUL4BQ13620 913 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 DHCR24Q15392 516 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 MDH1BQ5I0G3 518 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 DAB2IPQ5VWQ8 1189 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 ANO7Q6IWH7 933 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 PSAPL1Q6NUJ1 521 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 RHBDF2Q6PJF5 856 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 KRBA2Q6ZNG9 492 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 UNC13DQ70J99 1090 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 MDGA1Q8NFP4 955 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 ZNF507Q8TCN5 953 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 NOC3LQ8WTT2 800 aaKnown RBP12.61□□□□□ -0.39
CKAP4-202ENST00000552828 MMS19Q96T76 1030 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 MRPL45Q9BRJ2 306 aaKnown RBP12.61□□□□□ -0.39
CKAP4-202ENST00000552828 TMEM30AQ9NV96 361 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 INVSQ9Y283 1065 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 CPQQ9Y646 472 aa12.61□□□□□ -0.39
CKAP4-202ENST00000552828 CDX4O14627 284 aaPredicted RBP12.6□□□□□ -0.39
CKAP4-202ENST00000552828 TGFB1I1O43294 461 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 PROS1P07225 676 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 HNRNPLP14866 589 aaKnown RBP eCLIP12.6□□□□□ -0.39
CKAP4-202ENST00000552828 PTPN1P18031 435 aaKnown RBP12.6□□□□□ -0.39
CKAP4-202ENST00000552828 CSRP1P21291 193 aaKnown RBP12.6□□□□□ -0.39
CKAP4-202ENST00000552828 BCKDHBP21953 392 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 CASP1P29466 404 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 KIR2DL1P43626 348 aaPredicted RBP12.6□□□□□ -0.39
CKAP4-202ENST00000552828 SLC6A11P48066 632 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 NOVA1P51513 510 aaKnown RBP12.6□□□□□ -0.39
CKAP4-202ENST00000552828 CACNA2D1P54289 1103 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 SEC13P55735 322 aa12.6□□□□□ -0.39
CKAP4-202ENST00000552828 SNRPFP62306 86 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms