RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ZNF518BQ9C0D4 1074 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 FBXO44Q9H4M3 255 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 DMAP1Q9NPF5 467 aaPredicted RBP11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 TBC1D14Q9P2M4 693 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 ZDHHC9Q9Y397 364 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 SPTBN4Q9H254 2564 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 TSC2P49815 1807 aa11.56□□□□□ -0.56
VTI1BP3-201ENST00000550220 GOLGA6L4A6NEF3 574 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 OTOL1A6NHN0 477 aaPredicted RBP11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 AKAP3O75969 853 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 ZNF202O95125 648 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 ABL1P00519 1130 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 ASS1P00966 412 aaKnown RBP11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 OAS1P00973 400 aaKnown RBP11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 NR2F2P24468 414 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 GTF2H1P32780 548 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 PSMC2P35998 433 aaKnown RBP11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 USP46P62068 366 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 DPYDQ12882 1025 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 ADAM9Q13443 819 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 PREPLQ4J6C6 727 aaPredicted RBP11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 SNX30Q5VWJ9 437 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 CEP68Q76N32 757 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 SYT13Q7L8C5 426 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 DGLUCYQ7Z3D6 616 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 ADGRG2Q8IZP9 1017 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 TTC39CQ8N584 583 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 TTC16Q8NEE8 873 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 PLEKHO2Q8TD55 490 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 FBXO32Q969P5 355 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 RMDN1Q96DB5 314 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 OTUB2Q96DC9 234 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 FAXDC2Q96IV6 333 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 LOXL4Q96JB6 756 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 DPEP3Q9H4B8 488 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 SMYD3Q9H7B4 428 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 CYP3A43Q9HB55 503 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 RMND1Q9NWS8 449 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 DLL3Q9NYJ7 618 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 IL37Q9NZH6 218 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 WNT6Q9Y6F9 365 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 VPS13AQ96RL7 3174 aa11.55□□□□□ -0.56
VTI1BP3-201ENST00000550220 HRO43593 1189 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 STX10O60499 249 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 VNN1O95497 513 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 EGFP01133 1207 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 MBL2P11226 248 aaPredicted RBP11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 EIF2DP41214 584 aaKnown RBP11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 CDH8P55286 799 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 DLG4P78352 724 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 EDRF1Q3B7T1 1238 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 WDR44Q5JSH3 913 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 HECTD3Q5T447 861 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 NUDT18Q6ZVK8 323 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 CACNA2D4Q7Z3S7 1137 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 FAM35AQ86V20 835 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 RIN3Q8TB24 985 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 DUSP9Q99956 384 aaKnown RBP11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 RNF38Q9H0F5 515 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 LINC00597Q9H2U6 94 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 FAM124BQ9H5Z6 455 aaPredicted RBP11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 HOOK1Q9UJC3 728 aaKnown RBP11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 USP18Q9UMW8 372 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 NME7Q9Y5B8 376 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 COL4A3Q01955 1670 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 TCHHQ07283 1943 aa11.54□□□□□ -0.56
VTI1BP3-201ENST00000550220 FANCMQ8IYD8 2048 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 ZNF292O60281 2723 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 E2F8A0AVK6 867 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 FAM92AA1XBS5 289 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 CLDN5O00501 218 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 RNF40O75150 1001 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 AP1G2O75843 785 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 ADH1CP00326 375 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 HLA-DRAP01903 254 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 PIK3CAP42336 1068 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 MCCD1P59942 119 aaPredicted RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 NUCB2P80303 420 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 RSPO4Q2I0M5 234 aaPredicted RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 HSF5Q4G112 596 aaPredicted RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 HEATR6Q6AI08 1181 aaKnown RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 ACOT1Q86TX2 421 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 C11orf74Q86VG3 221 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 FAM186BQ8IYM0 893 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 FUKQ8N0W3 1084 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 GAB3Q8WWW8 586 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 CHFRQ96EP1 664 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 KCNK16Q96T55 309 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 RTKNQ9BST9 563 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 NT5C1AQ9BXI3 368 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 NACA2Q9H009 215 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 FBRSL1Q9HCM7 1045 aaKnown RBP11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 TMEM8AQ9HCN3 771 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 CSNK1G1Q9HCP0 422 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 EBF1Q9UH73 591 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 SH3BP1Q9Y3L3 701 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 GTF3C3Q9Y5Q9 886 aa11.53□□□□□ -0.56
VTI1BP3-201ENST00000550220 CPQQ9Y646 472 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms