RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 CLTAP09496 248 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 EIF2DP41214 584 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 IL12RB1P42701 662 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 CSRP3P50461 194 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 SMARCB1Q12824 385 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 TARDBPQ13148 414 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 TOB2Q14106 344 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 CCDC142Q17RM4 750 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 C6orf118Q5T5N4 469 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 SPATA1Q5VX52 437 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 METTL23Q86XA0 190 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 SNIP1Q8TAD8 396 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 PYM1Q9BRP8 204 aaKnown RBP16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 TRIM4Q9C037 500 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 UXTQ9UBK9 157 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 RAD54BQ9Y620 910 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 SLCO1B1Q9Y6L6 691 aa16.56■□□□□ 0.24
CLSTN3-216ENST00000545663 CABIN1Q9Y6J0 2220 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 PIRO00625 290 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 ADH5P11766 374 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 RPA1P27694 616 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 MATR3P43243 847 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 PPP2R3AQ06190 1150 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 MCL1Q07820 350 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 ENOX2Q16206 610 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 PREPLQ4J6C6 727 aaPredicted RBP16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 EGFLAMQ63HQ2 1017 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 DCP1BQ8IZD4 617 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 IPO4Q8TEX9 1081 aaKnown RBP16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 FGF11Q92914 225 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 KCNB2Q92953 911 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 RNF38Q9H0F5 515 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 CPNE5Q9HCH3 593 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 SMPD4Q9NXE4 827 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 GTF3C3Q9Y5Q9 886 aa16.55■□□□□ 0.24
CLSTN3-216ENST00000545663 BCAT2O15382 392 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 CLDN3O15551 220 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 HIP1RO75146 1068 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 NFICP08651 508 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 NCAM1P13591 858 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 NTSR1P30989 418 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 CSNK1EP49674 416 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 KCNH2Q12809 1159 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 LY6G5CQ5SRR4 150 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 C10orf76Q5T2E6 689 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 ARHGAP40Q5TG30 622 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 JADE1Q6IE81 842 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 IL27RAQ6UWB1 636 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 USP49Q70CQ1 688 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 FAM212AQ96EL1 285 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 WBP1Q96G27 269 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 TOE1Q96GM8 510 aaKnown RBP16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 MRGPRX1Q96LB2 322 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 DRC1Q96MC2 740 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 GPR174Q9BXC1 333 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 DSEQ9UL01 958 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 SNX11Q9Y5W9 270 aa16.54■□□□□ 0.24
CLSTN3-216ENST00000545663 RELNP78509 3460 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 ANAPC1Q9H1A4 1944 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 NOTCH2Q04721 2471 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 ANO9A1A5B4 782 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 CD6P30203 668 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 RPL10AP62906 217 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 MAPK7Q13164 816 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 RTP5Q14D33 572 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 KIF19Q2TAC6 998 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 BMP2KLQ5H9B9 411 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 DCAF12L1Q5VU92 463 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 KIAA1324Q6UXG2 1013 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 TRMT11Q7Z4G4 463 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 TMEM176AQ96HP8 235 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 NAF1Q96HR8 494 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 CFAP97Q9P2B7 532 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 IL17BQ9UHF5 180 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 EIF2B4Q9UI10 523 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 RBM19Q9Y4C8 960 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 ANKRD17O75179 2603 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 DOPEY2Q9Y3R5 2298 aa16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 SPTAN1Q13813 2472 aaKnown RBP16.53■□□□□ 0.24
CLSTN3-216ENST00000545663 CBX4O00257 560 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 ZBTB24O43167 697 aaPredicted RBP16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 BRINP1O60477 761 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 TULP3O75386 442 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 ADH1CP00326 375 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 NTRK1P04629 796 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 IL9RQ01113 521 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 RHDQ02161 417 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 SUZ12Q15022 739 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 PRICKLE2Q7Z3G6 844 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 SCN4BQ8IWT1 228 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 ETFBKMTQ8IXQ9 262 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 FSIP1Q8NA03 581 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 C1orf216Q8TAB5 229 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 WSB2Q9NYS7 404 aaPredicted RBP16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 NXF1Q9UBU9 619 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 CPQQ9Y646 472 aa16.52■□□□□ 0.24
CLSTN3-216ENST00000545663 SCN1AP35498 2009 aa16.52■□□□□ 0.23
CLSTN3-216ENST00000545663 NBPF19A0A087WUL8 3843 aa16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.51■□□□□ 0.23
CLSTN3-216ENST00000545663 KCNJ18B7U540 433 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms