RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PLCH1Q4KWH8 1693 aa12.93□□□□□ -0.34
USP3-203ENST00000538686 ASTN2O75129 1339 aaPredicted RBP12.93□□□□□ -0.34
USP3-203ENST00000538686 NFASCO94856 1347 aa12.93□□□□□ -0.34
USP3-203ENST00000538686 EMSYQ7Z589 1322 aa12.93□□□□□ -0.34
USP3-203ENST00000538686 TCRBV7S2A1N4TA0A589 114 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 TRIM64BA6NI03 449 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 ATP2A1O14983 1001 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 LRRN2O75325 713 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 GMNNO75496 209 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 CCDC159P0C7I6 412 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 RCVRNP35243 200 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 HSPA14Q0VDF9 509 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 GRB10Q13322 594 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 LRRC41Q15345 812 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 DGKDQ16760 1214 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 C15orf59Q2T9L4 293 aaPredicted RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 EFHC2Q5JST6 749 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 TMTC4Q5T4D3 741 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 SLX4IPQ5VYV7 408 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 IZUMO3Q5VZ72 239 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 ATG16L1Q676U5 607 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 PAOXQ6QHF9 649 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 USP43Q70EL4 1123 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 UBE2Q1Q7Z7E8 422 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 PRUNE1Q86TP1 453 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 CHERPQ8IWX8 916 aaKnown RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 FBXW8Q8N3Y1 598 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 ADAMTS16Q8TE57 1224 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 GIMAP1Q8WWP7 306 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 TMIGD2Q96BF3 282 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 RMND5BQ96G75 393 aaPredicted RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 POP1Q99575 1024 aaKnown RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 IRF2BPLQ9H1B7 796 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 STN1Q9H668 368 aaKnown RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 DAPK2Q9UIK4 370 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 PCDHA6Q9UN73 950 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 PCDHA8Q9Y5H6 950 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 KIF1AQ12756 1690 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 FAM237BA0A1B0GVD1 139 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 GIPC1O14908 333 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 NOL3O60936 208 aaKnown RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 GUCY1B2O75343 617 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 DLATP10515 647 aaKnown RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 MARCKSL1P49006 195 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 BMXP51813 675 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 AP3M2P53677 418 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 GPC5P78333 572 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 CCNG2Q16589 344 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 ZNF790Q6PG37 636 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 RFPL4BQ6ZWI9 263 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 KRT25Q7Z3Z0 450 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 RNF169Q8NCN4 708 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 OLIG1Q8TAK6 271 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 GIPC2Q8TF65 315 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 RASSF5Q8WWW0 418 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 DCUN1D5Q9BTE7 237 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 OSBPL11Q9BXB4 747 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 ZNF341Q9BYN7 854 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 MARCH7Q9H992 704 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 C12orf10Q9HB07 376 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 SAYSD1Q9NPB0 183 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 SIX2Q9NPC8 291 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 RIC8BQ9NVN3 520 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 ZMAT5Q9UDW3 170 aaKnown RBP12.92□□□□□ -0.34
USP3-203ENST00000538686 EBF1Q9UH73 591 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 PCDHGA11Q9Y5H2 935 aa12.92□□□□□ -0.34
USP3-203ENST00000538686 MYO3BQ8WXR4 1341 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 GOLGA8QA0A0J9YX86 632 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 A0A1W2PPM1 405 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 ILVBLA1L0T0 632 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 GOLGA8OA6NCC3 632 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 GOLGA8NF8WBI6 632 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 GOLGA8RI6L899 631 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 EML1O00423 815 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 ABCB1P08183 1280 aaPredicted RBP12.91□□□□□ -0.34
USP3-203ENST00000538686 DCKP27707 260 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 TRPC3Q13507 836 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 WDR78Q5VTH9 848 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 KIAA1841Q6NSI8 718 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 IP6K1Q92551 441 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 SPATA17Q96L03 361 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 KCTD10Q9H3F6 313 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 LRRC4BQ9NT99 713 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 GCNT4Q9P109 453 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 PCDHGB4Q9UN71 923 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 PCDHGB5Q9Y5G0 923 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 ZNF536O15090 1300 aa12.91□□□□□ -0.34
USP3-203ENST00000538686 FAM172BPA6NC97 362 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 PRR5-ARHGAP8B1AHC4 643 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 XPO1O14980 1071 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 SLC16A3O15427 465 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 CLOCKO15516 846 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 FKBP9O95302 570 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 RRM1P23921 792 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ETV3P41162 512 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 EPHB1P54762 984 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ARHGAP8P85298 464 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ITGADQ13349 1161 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 DPYSQ14117 519 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 KLHL38Q2WGJ6 581 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms