RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PPP3CCP48454 512 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 IFRD2Q12894 506 aaPredicted RBP15.69■□□□□ 0.1
USP28-204ENST00000537642 USP4Q13107 963 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 ZNF77Q15935 545 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 CAMK4Q16566 473 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 FOXR2Q6PJQ5 311 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 FRMD5Q7Z6J6 570 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 SCAMP5Q8TAC9 235 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 MSANTD3Q96H12 275 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 FAXDC2Q96IV6 333 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 METTL14Q9HCE5 456 aaKnown RBP15.69■□□□□ 0.1
USP28-204ENST00000537642 HPS4Q9NQG7 708 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 IL37Q9NZH6 218 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 KIAA1468Q9P260 1216 aa15.69■□□□□ 0.1
USP28-204ENST00000537642 SPECC1L-ADORA2AF8WAN1 911 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 RTN3O95197 1032 aaPredicted RBP15.68■□□□□ 0.1
USP28-204ENST00000537642 PFKLP17858 780 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 ADORA2BP29275 332 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 CTHP32929 405 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 RPS9P46781 194 aaKnown RBP15.68■□□□□ 0.1
USP28-204ENST00000537642 SLC5A3P53794 718 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 STX17P56962 302 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 MTF1Q14872 753 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 ITPRIPL2Q3MIP1 535 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 WDR44Q5JSH3 913 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 TRIM68Q6AZZ1 485 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 TXNDC11Q6PKC3 985 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 RALGPS2Q86X27 583 aaPredicted RBP15.68■□□□□ 0.1
USP28-204ENST00000537642 MAML2Q8IZL2 1156 aaPredicted RBP15.68■□□□□ 0.1
USP28-204ENST00000537642 TRIML1Q8N9V2 468 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 CYFIP2Q96F07 1278 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 SLITRK1Q96PX8 696 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 HNRNPABQ99729 332 aaKnown RBP15.68■□□□□ 0.1
USP28-204ENST00000537642 ARID3AQ99856 593 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 CSNK1G1Q9HCP0 422 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 CISHQ9NSE2 258 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 SPATA6Q9NWH7 488 aaPredicted RBP15.68■□□□□ 0.1
USP28-204ENST00000537642 ARHGAP26Q9UNA1 814 aa15.68■□□□□ 0.1
USP28-204ENST00000537642 FANCMQ8IYD8 2048 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 BICDL2A1A5D9 508 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 OTOL1A6NHN0 477 aaPredicted RBP15.67■□□□□ 0.1
USP28-204ENST00000537642 OLFM2O95897 454 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 ABL1P00519 1130 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 OAS1P00973 400 aaKnown RBP15.67■□□□□ 0.1
USP28-204ENST00000537642 CHRNB1P11230 501 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 ARSAP15289 507 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 TCF3P15923 654 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 NBL1P41271 181 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 PDE6CP51160 858 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 MAP3K7CLP57077 242 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 ZXDBP98169 803 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 PAK1Q13153 545 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 RUNX3Q13761 415 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 CCDC40Q4G0X9 1142 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 ZNF394Q53GI3 561 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 CC2D1AQ6P1N0 951 aaPredicted RBP15.67■□□□□ 0.1
USP28-204ENST00000537642 C1orf228Q6PIY5 440 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 CLEC20AQ6ZU45 233 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 TTC16Q8NEE8 873 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 SH3RF2Q8TEC5 729 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 OVCA2Q8WZ82 227 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 FBXO32Q969P5 355 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 RNF38Q9H0F5 515 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 EBF3Q9H4W6 596 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 LMAN1LQ9HAT1 526 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 VPS13AQ96RL7 3174 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 MYO16Q9Y6X6 1858 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 USP34Q70CQ2 3546 aa15.67■□□□□ 0.1
USP28-204ENST00000537642 FAM92AA1XBS5 289 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 HHLA1C9JL84 531 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 PROB1E7EW31 1015 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 FAM200BP0CF97 657 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 SP9P0CG40 484 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 TRIM21P19474 475 aaKnown RBP15.66■□□□□ 0.1
USP28-204ENST00000537642 FMO5P49326 533 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 RAD23BP54727 409 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 SLC7A9P82251 487 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 PDGFRLQ15198 375 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 PPP1R26Q5T8A7 1209 aaPredicted RBP15.66■□□□□ 0.1
USP28-204ENST00000537642 GPRIN1Q7Z2K8 1008 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 SLC4A11Q8NBS3 891 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 PDZD8Q8NEN9 1154 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 CHFRQ96EP1 664 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 CHRDQ9H2X0 955 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 COMMD8Q9NX08 183 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 GMIPQ9P107 970 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 CHORDC1Q9UHD1 332 aaPredicted RBP15.66■□□□□ 0.1
USP28-204ENST00000537642 WNT6Q9Y6F9 365 aa15.66■□□□□ 0.1
USP28-204ENST00000537642 LEFTY2O00292 366 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 PMM2O15305 246 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 LAMTOR5O43504 91 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 ZDHHC11BP0C7U3 371 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 MTAPQ13126 283 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 CUL2Q13617 745 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 PON2Q15165 354 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 SNX30Q5VWJ9 437 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 CLEC17AQ6ZS10 378 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 TTC39CQ8N584 583 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 OSCP1Q8WVF1 389 aa15.65■□□□□ 0.1
USP28-204ENST00000537642 TMEM176AQ96HP8 235 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms