RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CATSPER3Q86XQ3 398 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 TRIML1Q8N9V2 468 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 SH3RF2Q8TEC5 729 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 C2orf15Q8WU43 125 aaKnown RBP8.88□□□□□ -0.99
CD44-232ENST00000531118 KIFAP3Q92845 792 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 SENP8Q96LD8 212 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 PI4K2AQ9BTU6 479 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 POLD4Q9HCU8 107 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 ABI2Q9NYB9 513 aaPredicted RBP8.88□□□□□ -0.99
CD44-232ENST00000531118 ARHGAP28Q9P2N2 729 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 DNMT3LQ9UJW3 386 aa8.88□□□□□ -0.99
CD44-232ENST00000531118 UBQLN1Q9UMX0 589 aaKnown RBP8.88□□□□□ -0.99
CD44-232ENST00000531118 MAGED2Q9UNF1 606 aaPredicted RBP8.88□□□□□ -0.99
CD44-232ENST00000531118 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.88□□□□□ -0.99
CD44-232ENST00000531118 MYO9AB2RTY4 2548 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 TRAV19A0A0A6YYK7 116 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CPLX1O14810 134 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 KAT7O95251 611 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CER1O95813 267 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 APODP05090 189 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CYP11A1P05108 521 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 ZNF883P0CG24 379 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CSH1P0DML2 217 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CSH2P0DML3 217 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CYP3A5P20815 502 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 VARSP26640 1264 aaKnown RBP8.87□□□□□ -0.99
CD44-232ENST00000531118 EIF2S3P41091 472 aaKnown RBP8.87□□□□□ -0.99
CD44-232ENST00000531118 TXKP42681 527 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 EVCP57679 992 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 PTK2Q05397 1052 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 SCRN1Q12765 414 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 ZC2HC1CQ53FD0 456 aaPredicted RBP8.87□□□□□ -0.99
CD44-232ENST00000531118 LRRC69Q6ZNQ3 347 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 RGL4Q8IZJ4 473 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 SPATA18Q8TC71 538 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 SETD7Q8WTS6 366 aaKnown RBP8.87□□□□□ -0.99
CD44-232ENST00000531118 TCHPQ9BT92 498 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 ZDHHC5Q9C0B5 715 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 LINC00597Q9H2U6 94 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 FAM124BQ9H5Z6 455 aaPredicted RBP8.87□□□□□ -0.99
CD44-232ENST00000531118 PRDM16Q9HAZ2 1276 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 IL21RQ9HBE5 538 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 CYP8B1Q9UNU6 501 aa8.87□□□□□ -0.99
CD44-232ENST00000531118 FNDC3AQ9Y2H6 1198 aaKnown RBP8.87□□□□□ -0.99
CD44-232ENST00000531118 CCDC169A6NNP5 214 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 ERVH48-1M5A8F1 160 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 PLK4O00444 970 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 FLRT2O43155 660 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 NOL4O94818 638 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 HLA-EP13747 358 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 EIF2DP41214 584 aaKnown RBP8.86□□□□□ -0.99
CD44-232ENST00000531118 NPTX2P47972 431 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 PPP2R3AQ06190 1150 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 SRSF1Q07955 248 aaKnown RBP eCLIP8.86□□□□□ -0.99
CD44-232ENST00000531118 SMARCB1Q12824 385 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 RESTQ13127 1097 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 NR5A1Q13285 461 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 KCNB1Q14721 858 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 AGERQ15109 404 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 SMAD1Q15797 465 aaKnown RBP8.86□□□□□ -0.99
CD44-232ENST00000531118 EMC10Q5UCC4 262 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 SDHAF4Q5VUM1 108 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 GPR155Q7Z3F1 870 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 ZCCHC9Q8N567 271 aaKnown RBP8.86□□□□□ -0.99
CD44-232ENST00000531118 FAM181AQ8N9Y4 354 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 EHBP1Q8NDI1 1231 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 TNFRSF25Q93038 417 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 TRMT2BQ96GJ1 504 aaKnown RBP8.86□□□□□ -0.99
CD44-232ENST00000531118 ZBTB45Q96K62 511 aaPredicted RBP8.86□□□□□ -0.99
CD44-232ENST00000531118 PNMA5Q96PV4 448 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 CDC6Q99741 560 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 CD93Q9NPY3 652 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 TM7SF3Q9NS93 570 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 IGSF5Q9NSI5 407 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 GJB4Q9NTQ9 266 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 GCNT4Q9P109 453 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 UXTQ9UBK9 157 aaPredicted RBP8.86□□□□□ -0.99
CD44-232ENST00000531118 ARHGAP26Q9UNA1 814 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 MYH10P35580 1976 aa8.86□□□□□ -0.99
CD44-232ENST00000531118 TTC26A0AVF1 554 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 C2orf78A6NCI8 922 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 MEI4A8MW99 385 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 XPOTO43592 962 aaKnown RBP8.85□□□□□ -0.99
CD44-232ENST00000531118 CILPO75339 1184 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 TOM1L1O75674 476 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 HOXB2P14652 356 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 GNSP15586 552 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 MATKP42679 507 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 SLC6A11P48066 632 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 PEX3P56589 373 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 LILRA4P59901 499 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 TOB2Q14106 344 aaPredicted RBP8.85□□□□□ -0.99
CD44-232ENST00000531118 ZBTB6Q15916 424 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 WDR45BQ5MNZ6 344 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 TRMT11Q7Z4G4 463 aaKnown RBP8.85□□□□□ -0.99
CD44-232ENST00000531118 LRRTM3Q86VH5 581 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 DAW1Q8N136 415 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 PHTF2Q8N3S3 785 aa8.85□□□□□ -0.99
CD44-232ENST00000531118 ARL14EPQ8N8R7 260 aaPredicted RBP8.85□□□□□ -0.99
CD44-232ENST00000531118 SNIP1Q8TAD8 396 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms