RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 CEP89Q96ST8 783 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 RIOK1Q9BRS2 568 aaKnown RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 MRI1Q9BV20 369 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 CRNKL1Q9BZJ0 848 aaKnown RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 NACAP1Q9BZK3 213 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 PCED1AQ9H1Q7 454 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 TDRD3Q9H7E2 651 aaKnown RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 METTL14Q9HCE5 456 aaKnown RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 ADARB2Q9NS39 739 aaKnown RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 ATP8A2Q9NTI2 1148 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 DDX56Q9NY93 547 aaKnown RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 CTNNA3Q9UI47 895 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 HACL1Q9UJ83 578 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 LIMCH1Q9UPQ0 1083 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 SLC4A4Q9Y6R1 1079 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 ZNF646O15015 1829 aaPredicted RBP5.2□□□□□ -1.58
USP48-211ENST00000526044 GAKO14976 1311 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 CCDC171Q6TFL3 1326 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 RAD50Q92878 1312 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 TIAM2Q8IVF5 1701 aa5.2□□□□□ -1.58
USP48-211ENST00000526044 RPAP1Q9BWH6 1393 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 POLR2AP24928 1970 aaKnown RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 DIRC3C9JPN6 131 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 NPIPB8E9PQR5 432 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 WNT10BO00744 389 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 HTRA2O43464 458 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 PRKAB2O43741 272 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 FAM20BO75063 409 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 GPR32O75388 356 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 SCAF4O95104 1147 aaKnown RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 FGAP02671 866 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 AMY1AP04745 511 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 PDGFRBP09619 1106 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 HSPD1P10809 573 aaKnown RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 VEGFAP15692 232 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 DDCP20711 480 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 APOBEC3AP31941 199 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 EPHX2P34913 555 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 RHBDL3P58872 404 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 SLC25A3Q00325 362 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 ALX1Q15699 326 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 VPS53Q5VIR6 699 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 USP50Q70EL3 339 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 ZNF589Q86UQ0 364 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 ZBTB46Q86UZ6 589 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 TEX11Q8IYF3 940 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 RNF169Q8NCN4 708 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 CPT1CQ8TCG5 803 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 MAP4K1Q92918 833 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 UPF2Q9HAU5 1272 aaKnown RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 TDP1Q9NUW8 608 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 TMOD2Q9NZR1 351 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 ZNF70Q9UC06 446 aaPredicted RBP5.19□□□□□ -1.58
USP48-211ENST00000526044 IPPQ9Y573 584 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 PCDHA13Q9Y5I0 950 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 PCDHAC2Q9Y5I4 1007 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 ACTL7AQ9Y615 435 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 HS3ST3A1Q9Y663 406 aa5.19□□□□□ -1.58
USP48-211ENST00000526044 SCN4AP35499 1836 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 ECM29Q5VYK3 1845 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 CLRN2A0PK11 232 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 CCDC154A6NI56 674 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 DRGXA6NNA5 263 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 TCP10L2B9ZVM9 353 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 LEFTY2O00292 366 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 ZNF213O14771 459 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 EPB41L2O43491 1005 aaKnown RBP5.18□□□□□ -1.58
USP48-211ENST00000526044 ENTPD3O75355 529 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 WDHD1O75717 1129 aaPredicted RBP5.18□□□□□ -1.58
USP48-211ENST00000526044 POMCP01189 267 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 RPLP2P05387 115 aaKnown RBP5.18□□□□□ -1.58
USP48-211ENST00000526044 FPR1P21462 350 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 MCCP23508 829 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 EDNRBP24530 442 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 PCSK1P29120 753 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 ALDH1A3P47895 512 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 TDO2P48775 406 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 NEK2P51955 445 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 RAP2BP61225 183 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 NHLH2Q02577 135 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 TCP10Q12799 353 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 PICALMQ13492 652 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 MTM1Q13496 603 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 NECTIN1Q15223 517 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 UAP1L1Q3KQV9 507 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 CCDC181Q5TID7 509 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 FKBP1CQ5VVH2 108 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 PPP4R3AQ6IN85 833 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 RSPH3Q86UC2 560 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 SYT12Q8IV01 421 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 FOXP4Q8IVH2 680 aaPredicted RBP5.18□□□□□ -1.58
USP48-211ENST00000526044 MAPKAPK5Q8IW41 473 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 DRC7Q8IY82 874 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 MIER2Q8N344 545 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 ZNF276Q8N554 614 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 SDR42E1Q8WUS8 393 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 SLC25A43Q8WUT9 341 aaPredicted RBP5.18□□□□□ -1.58
USP48-211ENST00000526044 STAG1Q8WVM7 1258 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 FAM151AQ8WW52 585 aa5.18□□□□□ -1.58
USP48-211ENST00000526044 DCPSQ96C86 337 aaKnown RBP5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms