RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PGM2Q96G03 612 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 DCLK3Q9C098 648 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 NDUFB9Q9Y6M9 179 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 DUOX2Q9NRD8 1548 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 LAMC3Q9Y6N6 1575 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 TRIM43BA6NCK2 446 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 SEMA3DO95025 777 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CLTBP09497 229 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 HSMCR30P0CW71 290 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC26A3P40879 764 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ARHGDIBP52566 201 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ELF3P78545 371 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CHRNDQ07001 517 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ENPEPQ07075 957 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC15A2Q16348 729 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 TSGA10IPQ3SY00 556 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 COBLL1Q53SF7 1204 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 LAYNQ6UX15 382 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ZBTB33Q86T24 672 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF605Q86T29 641 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PM20D2Q8IYS1 436 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ANKRD49Q8WVL7 239 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 FAM120BQ96EK7 910 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 NDNQ99608 321 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 KCTD14Q9BQ13 255 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PNPLA3Q9NST1 481 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 GTF3C4Q9UKN8 822 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PCDHB2Q9Y5E7 798 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 BCLAF3A2AJT9 711 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 H0YIN7 160 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ECE2O60344 883 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 TBC1D12O60347 775 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 DGKIO75912 1065 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 RAPGEF3O95398 923 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CYP2C8P10632 490 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PAICSP22234 425 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 AQP5P55064 265 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 MCL1Q07820 350 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 SYTL3Q4VX76 610 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 RASSF6Q6ZTQ3 369 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 TMIEQ8NEW7 156 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PHACTR1Q9C0D0 580 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 LATS2Q9NRM7 1088 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 GIN1Q9NXP7 522 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 NPM3O75607 178 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 RECQL5O94762 991 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 TSPAN19P0C672 248 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 HOXB8P17481 243 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CASP5P51878 434 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 HK2P52789 917 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CWF19L1Q69YN2 538 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 MRNIPQ6NTE8 343 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ZCCHC8Q6NZY4 707 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ABRAXAS1Q6UWZ7 409 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ADHFE1Q8IWW8 467 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 DEFB107AQ8IZN7 70 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CLHC1Q8NHS4 586 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PROX1Q92786 737 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 MYDGFQ969H8 173 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 Q96MT0 163 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 C7orf25Q9BPX7 421 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC25A23Q9BV35 468 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 MRPL4Q9BYD3 311 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 OSBPL6Q9BZF3 934 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 EFR3BQ9Y2G0 817 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 KDM5BQ9UGL1 1544 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF608Q9ULD9 1512 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 A0A0G2JPF8 293 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 METTL21EPA6NDL7 271 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 HNRNPCL3B7ZW38 293 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 HNRNPCL4P0DMR1 293 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 RBP3P10745 1247 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 HOXC8P31273 242 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 PHKA1P46020 1223 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 MTF1Q14872 753 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ZSWIM7Q19AV6 140 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 RBM46Q8TBY0 533 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 EEF1AKMT1Q8WVE0 214 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 COX4I2Q96KJ9 171 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 DNAJC7Q99615 494 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 DRG1Q9Y295 367 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 MROH7-TTC4A0A0A0MT08 1334 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 TEX46H3BTG2 121 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 UCHL3P15374 230 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ALOX15P16050 662 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 CDC25AP30304 524 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC16A1P53985 500 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 NEDD8Q15843 81 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 EAPPQ56P03 285 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 THNSL1Q8IYQ7 743 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 CCDC185Q8N715 623 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 SNX31Q8N9S9 440 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 C1orf131Q8NDD1 294 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 KCNB2Q92953 911 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 CMTM6Q9NX76 183 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 STOX2Q9P2F5 926 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ALG6Q9Y672 507 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 A0A0A6YYK5 440 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 M0R2C6 588 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms