RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 CPQQ9Y646 472 aa23.52■■□□□ 1.36
HDDC3-203ENST00000494993 A8MXQ7 604 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 OAS1P00973 400 aaKnown RBP23.51■■□□□ 1.35
HDDC3-203ENST00000494993 ATICP31939 592 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 MPLP40238 635 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 TAF10Q12962 218 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 GAB4Q2WGN9 574 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 FOXD4L5Q5VV16 416 aaPredicted RBP23.51■■□□□ 1.35
HDDC3-203ENST00000494993 TDRD10Q5VZ19 366 aaKnown RBP23.51■■□□□ 1.35
HDDC3-203ENST00000494993 FILIP1Q7Z7B0 1213 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 B3GALNT2Q8NCR0 500 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 USP33Q8TEY7 942 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 FOXD4L4Q8WXT5 416 aaPredicted RBP23.51■■□□□ 1.35
HDDC3-203ENST00000494993 SYAP1Q96A49 352 aaPredicted RBP23.51■■□□□ 1.35
HDDC3-203ENST00000494993 SLITRK1Q96PX8 696 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 ZNF518BQ9C0D4 1074 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 XYLT2Q9H1B5 865 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 SLC39A2Q9NP94 309 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 RXFP3Q9NSD7 469 aa23.51■■□□□ 1.35
HDDC3-203ENST00000494993 NXF1Q9UBU9 619 aaKnown RBP23.51■■□□□ 1.35
HDDC3-203ENST00000494993 MAP1BP46821 2468 aaKnown RBP23.5■■□□□ 1.35
HDDC3-203ENST00000494993 PVALEFA0A1B0GWK0 134 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 K7EQS6 105 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 CLDN5O00501 218 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 ABL1P00519 1130 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 CYP17A1P05093 508 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 DGKEP52429 567 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 ELF2Q15723 593 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 B3GNT5Q9BYG0 378 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 SMOC1Q9H4F8 434 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 VPS45Q9NRW7 570 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 FAM13BQ9NYF5 915 aa23.5■■□□□ 1.35
HDDC3-203ENST00000494993 LAMA1P25391 3075 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 SLC9A3R1O14745 358 aaPredicted RBP23.49■■□□□ 1.35
HDDC3-203ENST00000494993 DCLK1O15075 740 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 EXOC3O60645 756 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 PHACTR2O75167 634 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 RHOBTB1O94844 696 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 SEC13P55735 322 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 IFRD2Q12894 506 aaPredicted RBP23.49■■□□□ 1.35
HDDC3-203ENST00000494993 CUL4BQ13620 913 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 KNOP1Q1ED39 458 aaKnown RBP23.49■■□□□ 1.35
HDDC3-203ENST00000494993 FOXD4L6Q3SYB3 417 aaPredicted RBP23.49■■□□□ 1.35
HDDC3-203ENST00000494993 FOXD4L3Q6VB84 417 aaPredicted RBP23.49■■□□□ 1.35
HDDC3-203ENST00000494993 ADGRG2Q8IZP9 1017 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 TSTD1Q8NFU3 115 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 PLEKHO2Q8TD55 490 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 VRTNQ9H8Y1 702 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 SMPD4Q9NXE4 827 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 PCDHA7Q9UN72 937 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 CHD8Q9HCK8 2581 aa23.49■■□□□ 1.35
HDDC3-203ENST00000494993 KMT2BQ9UMN6 2715 aaPredicted RBP23.49■■□□□ 1.35
HDDC3-203ENST00000494993 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP23.48■■□□□ 1.35
HDDC3-203ENST00000494993 KCNA4P22459 653 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 AFMP43652 599 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 CASP4P49662 377 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 DHCR24Q15392 516 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 C2orf27AQ580R0 203 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 STPG1Q5TH74 334 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 RESP18Q5W5W9 173 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 DDX42Q86XP3 938 aaKnown RBP eCLIP23.48■■□□□ 1.35
HDDC3-203ENST00000494993 NUP93Q8N1F7 819 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 SNX21Q969T3 373 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 SMYD3Q9H7B4 428 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 CFAP97Q9P2B7 532 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 PLXND1Q9Y4D7 1925 aa23.48■■□□□ 1.35
HDDC3-203ENST00000494993 ANTXRLA6NF34 631 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 TM4SF5O14894 197 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 RTN3O95197 1032 aaPredicted RBP23.47■■□□□ 1.35
HDDC3-203ENST00000494993 F13A1P00488 732 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 ZSCAN22P10073 491 aaPredicted RBP23.47■■□□□ 1.35
HDDC3-203ENST00000494993 MBL2P11226 248 aaPredicted RBP23.47■■□□□ 1.35
HDDC3-203ENST00000494993 YWHAQP27348 245 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 ME1P48163 572 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 ZNF699Q32M78 642 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 PDZD8Q8NEN9 1154 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 OVCA2Q8WZ82 227 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 TPSD1Q9BZJ3 242 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 MMP17Q9ULZ9 603 aa23.47■■□□□ 1.35
HDDC3-203ENST00000494993 SCAMP3O14828 347 aaKnown RBP23.46■■□□□ 1.35
HDDC3-203ENST00000494993 ATP8B3O60423 1300 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 PDIA4P13667 645 aaKnown RBP23.46■■□□□ 1.35
HDDC3-203ENST00000494993 GBP1P32455 592 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 CDH8P55286 799 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 BIRC3Q13489 604 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 FAM35AQ86V20 835 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 RASSF3Q86WH2 238 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 GRAMD1CQ8IYS0 662 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 GOLGA5Q8TBA6 731 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 CEP192Q8TEP8 1941 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 PARD3BQ8TEW8 1205 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 FBXO32Q969P5 355 aa23.46■■□□□ 1.35
HDDC3-203ENST00000494993 TNRC6BQ9UPQ9 1833 aaKnown RBP23.46■■□□□ 1.35
HDDC3-203ENST00000494993 LRRIQ3A6PVS8 624 aaPredicted RBP23.45■■□□□ 1.34
HDDC3-203ENST00000494993 EIF2DP41214 584 aaKnown RBP23.45■■□□□ 1.34
HDDC3-203ENST00000494993 SLC6A11P48066 632 aa23.45■■□□□ 1.34
HDDC3-203ENST00000494993 AP3M2P53677 418 aa23.45■■□□□ 1.34
HDDC3-203ENST00000494993 MRPS21P82921 87 aaKnown RBP23.45■■□□□ 1.34
HDDC3-203ENST00000494993 CREB5Q02930 508 aa23.45■■□□□ 1.34
HDDC3-203ENST00000494993 USP39Q53GS9 565 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms