RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	SRF	P11831	508 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	GZMA	P12544	262 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	IL9	P15248	144 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	FER	P16591	822 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLC9A1	P19634	815 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CDK11B	P21127	795 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	BDNF	P23560	247 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	ACAT1	P24752	427 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CYP2F1	P24903	491 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	YWHAQ	P27348	245 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	GNA15	P30679	374 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	GRIK1	P39086	918 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	EIF2D	P41214	584 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	GPD2	P43304	727 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	GABRB2	P47870	512 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	KCNQ1	P51787	676 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	KPNA1	P52294	538 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLC5A3	P53794	718 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CDH8	P55286	799 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CDK17	Q00537	523 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CYP27A1	Q02318	531 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TFF2	Q03403	129 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	USP4	Q13107	963 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TDG	Q13569	410 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	PTPN21	Q16825	1174 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	ARHGAP29	Q52LW3	1261 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SCARA3	Q6AZY7	606 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	LLGL2	Q6P1M3	1020 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	MSANTD2	Q6P1R3	559 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	GRASP	Q7Z6J2	395 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	ACOT1	Q86TX2	421 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	MFSD6L	Q8IWD5	586 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SUGP1	Q8IWZ8	645 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CMTM8	Q8IZV2	173 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CELF5	Q8N6W0	485 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	MSANTD4	Q8NCY6	345 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SHKBP1	Q8TBC3	707 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLC2A14	Q8TDB8	520 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	EPS8L1	Q8TE68	723 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZNF606	Q8WXB4	792 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	MRPS31	Q92665	395 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TATDN2	Q93075	761 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	AZIN2	Q96A70	460 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TWNK	Q96RR1	684 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TMEM209	Q96SK2	561 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	UHRF1	Q96T88	793 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SEPT5	Q99719	369 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	SMO	Q99835	787 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TSPY26P	Q9H489	355 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	DPEP3	Q9H4B8	488 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	RETREG1	Q9H6L5	497 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CBX8	Q9HC52	389 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZFP14	Q9HCL3	533 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	UBE2T	Q9NPD8	197 aa	Predicted RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	KRT82	Q9NSB4	513 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TRPM5	Q9NZQ8	1165 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	HMGXB4	Q9UGU5	601 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	DNAJC12	Q9UKB3	198 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TSPAN16	Q9UKR8	245 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	DUSP12	Q9UNI6	340 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	MRPS23	Q9Y3D9	190 aa	Known RBP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	CEP83	Q9Y592	693 aa		5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	5.37	□□□□□ -1.55
HDAC6-223	ENST00000480525	TICRR	Q7Z2Z1	1910 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	E2F8	A0AVK6	867 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	C2CD4D	B7Z1M9	353 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TNFRSF10A	O00220	468 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ARNTL	O00327	626 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SLC9A3R1	O14745	358 aa	Predicted RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CCL16	O15467	120 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	DCX	O43602	365 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ATP2C2	O75185	946 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	TADA3	O75528	432 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ZBED1	O96006	694 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ERBB2	P04626	1255 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CYP1A1	P04798	512 aa	Predicted RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PDGFRB	P09619	1106 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	USP17L7	P0C7H9	530 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	C7	P10643	843 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	ATP1A3	P13637	1013 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CYP11B1	P15538	503 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PSMC3	P17980	439 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	FCAR	P24071	287 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	GABRR2	P28476	465 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CA8	P35219	290 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CLCN1	P35523	988 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	SOX5	P35711	763 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	AVPR1A	P37288	418 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CCR2	P41597	374 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	STAT1	P42224	750 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	RAP1GAP	P47736	663 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	PSMC1	P62191	440 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	RBM10	P98175	930 aa	Known RBP	5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	FANCC	Q00597	558 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	AMPD2	Q01433	879 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CDR2	Q01850	454 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	CENPC	Q03188	943 aa		5.36	□□□□□ -1.55
HDAC6-223	ENST00000480525	UBXN1	Q04323	297 aa		5.36	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms