RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	RXFP2	Q8WXD0	754 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	CHST7	Q9NS84	486 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	EHD2	Q9NZN4	543 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	PCDHA3	Q9Y5H8	950 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	MIF4GD	A9UHW6	222 aa	Known RBP	11.78	□□□□□ -0.52
APTX-223	ENST00000479656	PDE2A	O00408	941 aa	Predicted RBP	11.78	□□□□□ -0.52
APTX-223	ENST00000479656	CEP104	O60308	925 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	CAPN15	O75808	1086 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	SOD2	P04179	222 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	CPB1	P15086	417 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	PDGFRA	P16234	1089 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	ATP2A2	P16615	1042 aa	Known RBP	11.78	□□□□□ -0.52
APTX-223	ENST00000479656	RPL17	P18621	184 aa	Known RBP	11.78	□□□□□ -0.52
APTX-223	ENST00000479656	FLT3	P36888	993 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	SSR1	P43307	286 aa	Known RBP	11.78	□□□□□ -0.52
APTX-223	ENST00000479656	PEX5	P50542	639 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	TAS2R40	P59535	323 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	ADCY1	Q08828	1119 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	RAB41	Q5JT25	222 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	SCN4B	Q8IWT1	228 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	SIX6OS1	Q8N1H7	587 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	UBL4B	Q8N7F7	174 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	ATAD1	Q8NBU5	361 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	FBXO22	Q8NEZ5	403 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	ALG3	Q92685	438 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	PBK	Q96KB5	322 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.78	□□□□□ -0.52
APTX-223	ENST00000479656	SMARCAL1	Q9NZC9	954 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	PCDHB5	Q9Y5E4	795 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	CDY1	Q9Y6F8	540 aa		11.78	□□□□□ -0.52
APTX-223	ENST00000479656	CCDC66	A2RUB6	948 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	C2CD4B	A6NLJ0	364 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	ADAM12	O43184	909 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	TLL1	O43897	1013 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	LINC00271	P0C7V0	271 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	TCF4	P15884	667 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	GPD1	P21695	349 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	CTNNA2	P26232	953 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	MAN1A1	P33908	653 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	CTNNA1	P35221	906 aa	Known RBP	11.77	□□□□□ -0.53
APTX-223	ENST00000479656	MRPS5	P82675	430 aa	Known RBP	11.77	□□□□□ -0.53
APTX-223	ENST00000479656	GPR17	Q13304	367 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	ZNF211	Q13398	564 aa	Predicted RBP	11.77	□□□□□ -0.53
APTX-223	ENST00000479656	PSMD5	Q16401	504 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	CFAP221	Q4G0U5	840 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	SH3PXD2A	Q5TCZ1	1133 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	DCAF12L1	Q5VU92	463 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	RNF19B	Q6ZMZ0	732 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	SLC26A9	Q7LBE3	791 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	DDX53	Q86TM3	631 aa	Known RBP	11.77	□□□□□ -0.53
APTX-223	ENST00000479656	ARFGAP1	Q8N6T3	406 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	CEP112	Q8N8E3	955 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	NIPA2	Q8N8Q9	360 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	MNS1	Q8NEH6	495 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	PHOSPHO2	Q8TCD6	241 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	FNIP1	Q8TF40	1166 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	PIK3R5	Q8WYR1	880 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	CFAP57	Q96MR6	1250 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	SLC9A7	Q96T83	725 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	RAD9A	Q99638	391 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	ULBP1	Q9BZM6	244 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	AAAS	Q9NRG9	546 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	LCMT1	Q9UIC8	334 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	SLC27A5	Q9Y2P5	690 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	PCDHB12	Q9Y5F1	795 aa		11.77	□□□□□ -0.53
APTX-223	ENST00000479656	LCHN	A4D1U4	455 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	USP17L7	P0C7H9	530 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	OR1D2	P34982	312 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	GPR15	P49685	360 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	ZNF143	P52747	638 aa	Predicted RBP	11.76	□□□□□ -0.53
APTX-223	ENST00000479656	DDR2	Q16832	855 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.76	□□□□□ -0.53
APTX-223	ENST00000479656	CCDC14	Q49A88	953 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	EFHC1	Q5JVL4	640 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	CCDC181	Q5TID7	509 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	SDHAF4	Q5VUM1	108 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	AADACL2	Q6P093	401 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	VPS52	Q8N1B4	723 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	MYRIP	Q8NFW9	859 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	FUBP3	Q96I24	572 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
APTX-223	ENST00000479656	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.76	□□□□□ -0.53
APTX-223	ENST00000479656	MTRR	Q9UBK8	725 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	BACE2	Q9Y5Z0	518 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	NLRC5	Q86WI3	1866 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	MTMR11	A4FU01	709 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	CARNS1	A5YM72	827 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	CES2	O00748	559 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	FGF18	O76093	207 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	VNN2	O95498	520 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	PYGM	P11217	842 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	GJC1	P36383	396 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	SCNN1A	P37088	669 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	PAFAH1B1	P43034	410 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	RWDD2B	P57060	319 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	DAOA	P59103	153 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	ATP11A	P98196	1134 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	DSG1	Q02413	1049 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	CDO1	Q16878	200 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	ATP13A4	Q4VNC1	1196 aa		11.76	□□□□□ -0.53
APTX-223	ENST00000479656	RAB6C	Q53S08	254 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms