RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 SPATA6Q9NWH7 488 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-211ENST00000477612 ARHGAP26Q9UNA1 814 aa23.09■■□□□ 1.29
COL9A3-211ENST00000477612 LAMTOR5O43504 91 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 CILPO75339 1184 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 CKMP06732 381 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 SOX9P48436 509 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 MORC3Q14149 939 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 MTF1Q14872 753 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 SNX30Q5VWJ9 437 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 ZMIZ2Q8NF64 920 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 SLITRK1Q96PX8 696 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 TWNKQ96RR1 684 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 HNRNPABQ99729 332 aaKnown RBP23.08■■□□□ 1.29
COL9A3-211ENST00000477612 MED10Q9BTT4 135 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 NT5C1AQ9BXI3 368 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 SEMA4AQ9H3S1 761 aa23.08■■□□□ 1.29
COL9A3-211ENST00000477612 PPP1R3GB7ZBB8 358 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 AP1G2O75843 785 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 OAS1P00973 400 aaKnown RBP23.07■■□□□ 1.28
COL9A3-211ENST00000477612 TRIM21P19474 475 aaKnown RBP23.07■■□□□ 1.28
COL9A3-211ENST00000477612 YWHAQP27348 245 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 UBE2HP62256 183 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 SLC7A9P82251 487 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 PDGFRLQ15198 375 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 WDR44Q5JSH3 913 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 ISM2Q6H9L7 571 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 FRMD5Q7Z6J6 570 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 FILIP1Q7Z7B0 1213 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 TTC39CQ8N584 583 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 C12orf29Q8N999 325 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 PDZD8Q8NEN9 1154 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 SLC2A14Q8TDB8 520 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 NELL1Q92832 810 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 CEP63Q96MT8 703 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 SMOQ99835 787 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 MYO16Q9Y6X6 1858 aa23.07■■□□□ 1.28
COL9A3-211ENST00000477612 ZFHX2Q9C0A1 2572 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 OTOL1A6NHN0 477 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 ZDHHC11BP0C7U3 371 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 CCDC130P13994 396 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 ZXDBP98169 803 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 ORC1Q13415 861 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 CBWD6Q4V339 395 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 CBWD3Q5JTY5 395 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 CBWD5Q5RIA9 395 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 TTI2Q6NXR4 508 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 CC2D1AQ6P1N0 951 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 OSCP1Q8WVF1 389 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 SLC35C1Q96A29 364 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 CHFRQ96EP1 664 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 DUSP9Q99956 384 aaKnown RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 RNF38Q9H0F5 515 aa23.06■■□□□ 1.28
COL9A3-211ENST00000477612 METTL14Q9HCE5 456 aaKnown RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 PRMT8Q9NR22 394 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 ARMCX3Q9UH62 379 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-211ENST00000477612 PRR23AA6NEV1 266 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 PMM2O15305 246 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 GFRA3O60609 400 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 BEST1O76090 585 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 SLC5A3P53794 718 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 MTAPQ13126 283 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 LRRC32Q14392 662 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 DGKKQ5KSL6 1271 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 TRIM68Q6AZZ1 485 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 SCAMP5Q8TAC9 235 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 TTC8Q8TAM2 541 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 SH3RF2Q8TEC5 729 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 NKD2Q969F2 451 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-211ENST00000477612 CYFIP2Q96F07 1278 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 EBF3Q9H4W6 596 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 KRT82Q9NSB4 513 aa23.05■■□□□ 1.28
COL9A3-211ENST00000477612 CCINQ13939 588 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 GAS6Q14393 721 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 EML3Q32P44 896 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 DCAF17Q5H9S7 520 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-211ENST00000477612 TCERG1LQ5VWI1 586 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 CLEC20AQ6ZU45 233 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 ASCL5Q7RTU5 278 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 SYNPOQ8N3V7 929 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 TRIML1Q8N9V2 468 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 FBXO32Q969P5 355 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 DNAI2Q9GZS0 605 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 PNPLA8Q9NP80 782 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 FAM49BQ9NUQ9 324 aa23.04■■□□□ 1.28
COL9A3-211ENST00000477612 DUS2Q9NX74 493 aaKnown RBP23.04■■□□□ 1.28
COL9A3-211ENST00000477612 HHLA1C9JL84 531 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 TRDMT1O14717 391 aaKnown RBP23.03■■□□□ 1.28
COL9A3-211ENST00000477612 ARSAP15289 507 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 AMPD2Q01433 879 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 PON2Q15165 354 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 ZC3H14Q6PJT7 736 aaKnown RBP23.03■■□□□ 1.28
COL9A3-211ENST00000477612 TATDN2Q93075 761 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 ECT2Q9H8V3 914 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 ATG2BQ96BY7 2078 aa23.03■■□□□ 1.28
COL9A3-211ENST00000477612 MYOFQ9NZM1 2061 aa23.02■■□□□ 1.28
COL9A3-211ENST00000477612 BICDL2A1A5D9 508 aa23.02■■□□□ 1.28
COL9A3-211ENST00000477612 LEFTY2O00292 366 aa23.02■■□□□ 1.28
COL9A3-211ENST00000477612 FAM200BP0CF97 657 aa23.02■■□□□ 1.28
COL9A3-211ENST00000477612 TDGF1P13385 188 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms