RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 USP18Q9UMW8 372 aa18.89■□□□□ 0.62
CCM2-209ENST00000477605 DOCK5Q9H7D0 1870 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 HMGCRP04035 888 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 ERBB2P04626 1255 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 NEK3P51956 506 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 ZNF200P98182 395 aaPredicted RBP18.89■□□□□ 0.61
CCM2-209ENST00000477605 ROR1Q01973 937 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 GAD2Q05329 585 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 NAA25Q14CX7 972 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 EFTUD2Q15029 972 aaKnown RBP eCLIP18.89■□□□□ 0.61
CCM2-209ENST00000477605 FAM71DQ8N9W8 422 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 SMC1BQ8NDV3 1235 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 APOPT1Q96IL0 206 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 ZNF570Q96NI8 536 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 VRTNQ9H8Y1 702 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 RPF1Q9H9Y2 349 aaKnown RBP18.89■□□□□ 0.61
CCM2-209ENST00000477605 NPHS2Q9NP85 383 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 NXF1Q9UBU9 619 aaKnown RBP18.89■□□□□ 0.61
CCM2-209ENST00000477605 TNFSF13BQ9Y275 285 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 LRRC42Q9Y546 428 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 PPP2R3BQ9Y5P8 575 aa18.89■□□□□ 0.61
CCM2-209ENST00000477605 LPXNO60711 386 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 ZNF143P52747 638 aaPredicted RBP18.88■□□□□ 0.61
CCM2-209ENST00000477605 PTPN11Q06124 597 aaPredicted RBP18.88■□□□□ 0.61
CCM2-209ENST00000477605 CTC1Q2NKJ3 1217 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 SPATA18Q8TC71 538 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 MPHOSPH6Q99547 160 aaKnown RBP18.88■□□□□ 0.61
CCM2-209ENST00000477605 CNPY3Q9BT09 278 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 POLIQ9UNA4 740 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 TEX264Q9Y6I9 313 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 SCN4AP35499 1836 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 TCRBV7S3A2A0A539 114 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 CFAP69A5D8W1 941 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 IQCA1LA6NCM1 817 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 KLF11O14901 512 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 CCDC22O60826 627 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 PEX11AO75192 247 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 CD48P09326 243 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 P4HA1P13674 534 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 MARK3P27448 753 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 BASP1P80723 227 aaKnown RBP18.88■□□□□ 0.61
CCM2-209ENST00000477605 KCNJ11Q14654 390 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 TTC39CQ8N584 583 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 TMEM176AQ96HP8 235 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 TSSK1BQ9BXA7 367 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 PAK5Q9P286 719 aa18.88■□□□□ 0.61
CCM2-209ENST00000477605 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.88■□□□□ 0.61
CCM2-209ENST00000477605 SOWAHBA6NEL2 793 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 CILPO75339 1184 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 INHBAP08476 426 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 VDRP11473 427 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 ELK3P41970 407 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 ETV4P43268 484 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 SLC26A2P50443 739 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 PTK7Q13308 1070 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 ZNF449Q6P9G9 518 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 DARS2Q6PI48 645 aaKnown RBP18.87■□□□□ 0.61
CCM2-209ENST00000477605 SH2D5Q6ZV89 423 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 BZW1Q7L1Q6 419 aaKnown RBP18.87■□□□□ 0.61
CCM2-209ENST00000477605 MTDHQ86UE4 582 aaKnown RBP18.87■□□□□ 0.61
CCM2-209ENST00000477605 TEX9Q8N6V9 391 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 RTP4Q96DX8 246 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 PCSK1NQ9UHG2 260 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 ZNF180Q9UJW8 692 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 KIAA1257Q9ULG3 409 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 GJA3Q9Y6H8 435 aa18.87■□□□□ 0.61
CCM2-209ENST00000477605 TRDMT1O14717 391 aaKnown RBP18.86■□□□□ 0.61
CCM2-209ENST00000477605 MICAL2O94851 1124 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 GSTA2P09210 222 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 PLEKHG4Q58EX7 1191 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 FAM91A1Q658Y4 838 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 C4orf22Q6V702 233 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 MAP7D3Q8IWC1 876 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 TRIM42Q8IWZ5 723 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 EMC1Q8N766 993 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 HSPH1Q92598 858 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 ADPGKQ9BRR6 497 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 NFKBIZQ9BYH8 718 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 C10orf88Q9H8K7 445 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 KANSL3Q9P2N6 904 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 SLC17A7Q9P2U7 560 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 TJP2Q9UDY2 1190 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 SIX4Q9UIU6 781 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 SUFUQ9UMX1 484 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 TCRBV9S1A1TA0A576 114 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 ZBTB42B2RXF5 422 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 HAUS5O94927 633 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 CBX6O95503 412 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 TPBGLP0DKB5 382 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 GPD2P43304 727 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 ARFIP2P53365 341 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 TNFAIP2Q03169 654 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 POU5F1BQ06416 359 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 KRT72Q14CN4 511 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 PDK2Q15119 407 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 PRKD1Q15139 912 aaPredicted RBP18.86■□□□□ 0.61
CCM2-209ENST00000477605 LGSNQ5TDP6 509 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 SLC26A11Q86WA9 606 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 USP6NLQ92738 828 aa18.86■□□□□ 0.61
CCM2-209ENST00000477605 GPR20Q99678 358 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms