RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 TAF10Q12962 218 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 KNOP1Q1ED39 458 aaKnown RBP22.43■■□□□ 1.18
COL9A3-207ENST00000467819 TDRD10Q5VZ19 366 aaKnown RBP22.43■■□□□ 1.18
COL9A3-207ENST00000467819 RESP18Q5W5W9 173 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 FILIP1Q7Z7B0 1213 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 C12orf50Q8NA57 414 aaPredicted RBP22.43■■□□□ 1.18
COL9A3-207ENST00000467819 B3GALNT2Q8NCR0 500 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 SNX21Q969T3 373 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 CNTNAP3BQ96NU0 1288 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 B3GNT5Q9BYG0 378 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 CNTNAP3Q9BZ76 1288 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 RNF38Q9H0F5 515 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 XYLT2Q9H1B5 865 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 CGNQ9P2M7 1197 aaKnown RBP22.43■■□□□ 1.18
COL9A3-207ENST00000467819 ABCA7Q8IZY2 2146 aa22.43■■□□□ 1.18
COL9A3-207ENST00000467819 CACNA1BQ00975 2339 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 PVALEFA0A1B0GWK0 134 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 AKAP3O75969 853 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 APBB3O95704 486 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 STAU1O95793 577 aaKnown RBP22.42■■□□□ 1.18
COL9A3-207ENST00000467819 FAM163BP0C2L3 166 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 OPRD1P41143 372 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 PPP3CCP48454 512 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 BIRC3Q13489 604 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 SCARA5Q6ZMJ2 495 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 HSCBQ8IWL3 235 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 C12orf56Q8IXR9 622 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 PLEKHO2Q8TD55 490 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 SYAP1Q96A49 352 aaPredicted RBP22.42■■□□□ 1.18
COL9A3-207ENST00000467819 SLITRK1Q96PX8 696 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 SMOC1Q9H4F8 434 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 SMYD3Q9H7B4 428 aa22.42■■□□□ 1.18
COL9A3-207ENST00000467819 CYP17A1P05093 508 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 ZNF806P0C7X5 589 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 ATICP31939 592 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 CDH8P55286 799 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 SLC7A9P82251 487 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 CEP57L1Q8IYX8 460 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 ELMO3Q96BJ8 720 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 SERTAD1Q9UHV2 236 aa22.41■■□□□ 1.18
COL9A3-207ENST00000467819 CHD8Q9HCK8 2581 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 ANTXRLA6NF34 631 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 DCLK1O15075 740 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 OLFM2O95897 454 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 OAS1P00973 400 aaKnown RBP22.4■■□□□ 1.18
COL9A3-207ENST00000467819 ADRB1P08588 477 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 DGKEP52429 567 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 GAB4Q2WGN9 574 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 ZNF699Q32M78 642 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 PLK5Q496M5 336 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 C2orf27AQ580R0 203 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 IL31Q6EBC2 164 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 ZC3H10Q96K80 434 aaKnown RBP22.4■■□□□ 1.18
COL9A3-207ENST00000467819 MED10Q9BTT4 135 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 RXFP3Q9NSD7 469 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 CFAP97Q9P2B7 532 aa22.4■■□□□ 1.18
COL9A3-207ENST00000467819 MYO18AQ92614 2054 aaKnown RBP22.4■■□□□ 1.18
COL9A3-207ENST00000467819 LAMA1P25391 3075 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 LRRIQ3A6PVS8 624 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-207ENST00000467819 K7EQS6 105 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 MBL2P11226 248 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-207ENST00000467819 YWHAQP27348 245 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 MPLP40238 635 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 PKP1Q13835 747 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 ELF2Q15723 593 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 ZNF667Q5HYK9 610 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 NUP93Q8N1F7 819 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 TSTD1Q8NFU3 115 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 GOLGA5Q8TBA6 731 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 USP33Q8TEY7 942 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 FBXO32Q969P5 355 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 TPSD1Q9BZJ3 242 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 DUSP15Q9H1R2 295 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-207ENST00000467819 EXOC1Q9NV70 894 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 PCDHGA5Q9Y5G8 931 aa22.39■■□□□ 1.17
COL9A3-207ENST00000467819 ATP8B3O60423 1300 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 SLC9A3R1O14745 358 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-207ENST00000467819 KLRC4O43908 158 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 RTN3O95197 1032 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-207ENST00000467819 DNM1Q05193 864 aaKnown RBP22.38■■□□□ 1.17
COL9A3-207ENST00000467819 NCOA4Q13772 614 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 DHCR24Q15392 516 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 PLA2G2CQ5R387 149 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 FAM35AQ86V20 835 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 ADGRG2Q8IZP9 1017 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 SPRYD3Q8NCJ5 442 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 CCDC26Q8TAB7 109 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 PARD3BQ8TEW8 1205 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 KCNK16Q96T55 309 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 VRTNQ9H8Y1 702 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 EBF1Q9UH73 591 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 INVSQ9Y283 1065 aa22.38■■□□□ 1.17
COL9A3-207ENST00000467819 MAP1BP46821 2468 aaKnown RBP22.38■■□□□ 1.17
COL9A3-207ENST00000467819 PDIA4P13667 645 aaKnown RBP22.37■■□□□ 1.17
COL9A3-207ENST00000467819 GBP1P32455 592 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 STK4Q13043 487 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 ATL3Q6DD88 541 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 DDX42Q86XP3 938 aaKnown RBP eCLIP22.37■■□□□ 1.17
COL9A3-207ENST00000467819 SFTPA1Q8IWL2 248 aa22.37■■□□□ 1.17
COL9A3-207ENST00000467819 CCDC33Q8N5R6 958 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms