RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 ASCL5Q7RTU5 278 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 FUKQ8N0W3 1084 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ATRIPQ8WXE1 791 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ATP2A3Q93084 1043 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 DHTKD1Q96HY7 919 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-210ENST00000449684 FAM83CQ9BQN1 747 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 CHRDQ9H2X0 955 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 RAB20Q9NX57 234 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 CHMP5Q9NZZ3 219 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 GCNT4Q9P109 453 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 HMGXB4Q9UGU5 601 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ARMCX3Q9UH62 379 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-210ENST00000449684 MAN1B1Q9UKM7 699 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 ARHGAP26Q9UNA1 814 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 CACNA1IQ9P0X4 2223 aa16.45■□□□□ 0.22
LIMS1-210ENST00000449684 OBSL1O75147 1896 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 TRIM49BA6NDI0 452 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 PRR23AA6NEV1 266 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 FAM200BP0CF97 657 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 ARSAP15289 507 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 ANP32AP39687 249 aaKnown RBP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 CCR3P51677 355 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 SLC5A3P53794 718 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 MAP3K7CLP57077 242 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 GRSF1Q12849 480 aaKnown RBP eCLIP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 ZNF77Q15935 545 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 CCDC40Q4G0X9 1142 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 MAML2Q8IZL2 1156 aaPredicted RBP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 TTC39CQ8N584 583 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 C12orf29Q8N999 325 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 OSCP1Q8WVF1 389 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 OVCA2Q8WZ82 227 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 CYFIP2Q96F07 1278 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 NACA2Q9H009 215 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 APOBEC3GQ9HC16 384 aaKnown RBP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 METTL14Q9HCE5 456 aaKnown RBP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 HPS4Q9NQG7 708 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 RBM12Q9NTZ6 932 aaKnown RBP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 TMEM30AQ9NV96 361 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 COMMD8Q9NX08 183 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 CHORDC1Q9UHD1 332 aaPredicted RBP16.44■□□□□ 0.22
LIMS1-210ENST00000449684 WNT6Q9Y6F9 365 aa16.44■□□□□ 0.22
LIMS1-210ENST00000449684 GREB1Q4ZG55 1949 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 COL4A2P08572 1712 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 BICDL2A1A5D9 508 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 BIN1O00499 593 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 LMNAP02545 664 aaKnown RBP16.43■□□□□ 0.22
LIMS1-210ENST00000449684 MBL2P11226 248 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-210ENST00000449684 CXCL12P48061 93 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 PMS1P54277 932 aaKnown RBP16.43■□□□□ 0.22
LIMS1-210ENST00000449684 NRLP54845 237 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 INCA1Q0VD86 236 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 USP4Q13107 963 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 ZNF394Q53GI3 561 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 TSSK4Q6SA08 328 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 PAQR9Q6ZVX9 377 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 ZNF687Q8N1G0 1237 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 SCAMP5Q8TAC9 235 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 JAKMIP2Q96AA8 810 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 FAXDC2Q96IV6 333 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 HEXIM2Q96MH2 286 aaKnown RBP16.43■□□□□ 0.22
LIMS1-210ENST00000449684 HINFPQ9BQA5 517 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 FBXO44Q9H4M3 255 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 SMPD4Q9NXE4 827 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 CPQQ9Y646 472 aa16.43■□□□□ 0.22
LIMS1-210ENST00000449684 MYH10P35580 1976 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 LEFTY2O00292 366 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 CILPO75339 1184 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 NFATC1O95644 943 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 UBE2HP62256 183 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 HECTD3Q5T447 861 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 DDX42Q86XP3 938 aaKnown RBP eCLIP16.42■□□□□ 0.22
LIMS1-210ENST00000449684 SYNPOQ8N3V7 929 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 SPEM1Q8N4L4 309 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 RIN3Q8TB24 985 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 NELFBQ8WX92 580 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 SEMA4DQ92854 862 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 CEP63Q96MT8 703 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 HNRNPABQ99729 332 aaKnown RBP16.42■□□□□ 0.22
LIMS1-210ENST00000449684 SMOQ99835 787 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 RNF38Q9H0F5 515 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 ECT2Q9H8V3 914 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 ZSCAN32Q9NX65 697 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 PCDHGA2Q9Y5H1 932 aa16.42■□□□□ 0.22
LIMS1-210ENST00000449684 ANAPC1Q9H1A4 1944 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 SLC9A3R1O14745 358 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-210ENST00000449684 BEST1O76090 585 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 TCF3P15923 654 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 YWHAEP62258 255 aaKnown RBP16.41■□□□□ 0.22
LIMS1-210ENST00000449684 SLC7A9P82251 487 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 CETN1Q12798 172 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 CBWD6Q4V339 395 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 CBWD3Q5JTY5 395 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 CBWD5Q5RIA9 395 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 FILIP1Q7Z7B0 1213 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 ZC3H3Q8IXZ2 948 aaKnown RBP16.41■□□□□ 0.22
LIMS1-210ENST00000449684 TWNKQ96RR1 684 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 FAM126AQ9BYI3 521 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-210ENST00000449684 CSNK1G1Q9HCP0 422 aa16.41■□□□□ 0.22
LIMS1-210ENST00000449684 PRMT8Q9NR22 394 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms