RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 XPO7Q9UIA9 1087 aaKnown RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 TPX2Q9ULW0 747 aaKnown RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 WDR90Q96KV7 1748 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 C3orf70A6NLC5 250 aaPredicted RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 UGT1A9O60656 530 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 APRTP07741 180 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 C6orf222P0C671 652 aaPredicted RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 RBL1P28749 1068 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 FOXN2P32314 431 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 RPA3P35244 121 aaPredicted RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 PGGT1BP53609 377 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 HUNKP57058 714 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 PPP1R15BQ5SWA1 713 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 TWF2Q6IBS0 349 aaKnown RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 TBC1D1Q86TI0 1168 aaPredicted RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 ALLCQ8N6M5 410 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 C12orf50Q8NA57 414 aaPredicted RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 SLC2A14Q8TDB8 520 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 NT5C1AQ9BXI3 368 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 UGT1A7Q9HAW7 530 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 UGT1A10Q9HAW8 530 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 UGT1A8Q9HAW9 530 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 CD248Q9HCU0 757 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 RAB6BQ9NRW1 208 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 STK38LQ9Y2H1 464 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 SNX10Q9Y5X0 201 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 GLTPD2A6NH11 291 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 SIGLEC16A6NMB1 481 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 F8W810 466 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 EIF4BP23588 611 aaKnown RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 GBE1Q04446 702 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 HIBCHQ6NVY1 386 aaPredicted RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CES3Q6UWW8 571 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PNMA8AQ86V59 439 aaPredicted RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CXorf38Q8TB03 319 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PYROXD1Q8WU10 500 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 DEPDC1BQ8WUY9 529 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CPT1BQ92523 772 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 TGS1Q96RS0 853 aaKnown RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 WDR83Q9BRX9 315 aaKnown RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 NUDT5Q9UKK9 219 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 GRID1Q9ULK0 1009 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CNTN6Q9UQ52 1028 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 MAD1L1Q9Y6D9 718 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 DNALI1O14645 258 aaPredicted RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CREB3O43889 395 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PRPSAP2O60256 369 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CA4P22748 312 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 GPX6P59796 221 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PIGHQ14442 188 aaPredicted RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PPP2R5DQ14738 602 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 HADHQ16836 314 aaKnown RBP12.48□□□□□ -0.41
PTPRN-204ENST00000423636 SOWAHAQ2M3V2 549 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 CXCL17Q6UXB2 119 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PPP1R21Q6ZMI0 780 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PPTC7Q8NI37 304 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 FBF1Q8TES7 1133 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 ACSS2Q9NR19 701 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 DCTN4Q9UJW0 460 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 NUP205Q92621 2012 aa12.48□□□□□ -0.41
PTPRN-204ENST00000423636 PAPSS1O43252 624 aaPredicted RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 GCAP28676 217 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 ABCG1P45844 678 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 CCNA1P78396 465 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 BMPR2Q13873 1038 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 EML3Q32P44 896 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 CCDC14Q49A88 953 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 PALM2Q8IXS6 379 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 ZNF317Q96PQ6 595 aaPredicted RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 ARHGAP39Q9C0H5 1083 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 GBA2Q9HCG7 927 aaPredicted RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 NMRK2Q9NPI5 230 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 IGF2BP3O00425 579 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 TRUB2O95900 331 aaKnown RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 KRT4P19013 534 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 RBP5P82980 135 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 TRIM32Q13049 653 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 SPARCL1Q14515 664 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 TCEAL1Q15170 157 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 HIF1AQ16665 826 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 DGKDQ16760 1214 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 USP50Q70EL3 339 aaPredicted RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 PRPF39Q86UA1 669 aaKnown RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 TLK2Q86UE8 772 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 CCDC185Q8N715 623 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 TBC1D31Q96DN5 1066 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 PGM2Q96G03 612 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 ATXN7L3BQ96GX2 97 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 KCNG1Q9UIX4 513 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 BARX2Q9UMQ3 279 aaPredicted RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 EYSQ5T1H1 3165 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 SBF1O95248 1867 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 A0A1B0GUA9 196 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 CASTOR2A6NHX0 329 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 EIF4E1BA6NMX2 242 aaKnown RBP12.47□□□□□ -0.41
PTPRN-204ENST00000423636 AGTP01019 485 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 NEFHP12036 1026 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 AMPD1P23109 780 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 ELK3P41970 407 aa12.47□□□□□ -0.41
PTPRN-204ENST00000423636 E2F5Q15329 346 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms