RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ABRAQ8N0Z2 381 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 MARVELD2Q8N4S9 558 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 CERS5Q8N5B7 392 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 JADE3Q92613 823 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 GPRC5CQ9NQ84 441 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 SAE1Q9UBE0 346 aaPredicted RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 SORCS3Q9UPU3 1222 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 IKBKGQ9Y6K9 419 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 MYH9P35579 1960 aaKnown RBP11.16□□□□□ -0.62
USP54-204ENST00000422491 ADAMTSL1Q8N6G6 1762 aa11.16□□□□□ -0.62
USP54-204ENST00000422491 ZNF335Q9H4Z2 1342 aaPredicted RBP11.15□□□□□ -0.62
USP54-204ENST00000422491 A0A0B4J269 797 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 TTLL13PA6NNM8 815 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 F8VP50 259 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 RPS6KA4O75676 772 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 STK10O94804 968 aaKnown RBP11.15□□□□□ -0.62
USP54-204ENST00000422491 ACO1P21399 889 aaKnown RBP11.15□□□□□ -0.62
USP54-204ENST00000422491 TUBB3Q13509 450 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 TLR1Q15399 786 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 TRIP10Q15642 601 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 CHI3L2Q15782 390 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 NADK2Q4G0N4 442 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 RALGPS1Q5JS13 557 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 C1orf228Q6PIY5 440 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 C15orf39Q6ZRI6 1047 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 MAP4K3Q8IVH8 894 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 SH2D3AQ9BRG2 576 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 IQCGQ9H095 443 aaKnown RBP11.15□□□□□ -0.62
USP54-204ENST00000422491 SMYD3Q9H7B4 428 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 XPO7Q9UIA9 1087 aaKnown RBP11.15□□□□□ -0.62
USP54-204ENST00000422491 PRR12Q9ULL5 1215 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 TBX20Q9UMR3 447 aa11.15□□□□□ -0.62
USP54-204ENST00000422491 COL16A1Q07092 1604 aaPredicted RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 KBTBD13C9JR72 458 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 H3BNX3 289 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 DDX39AO00148 427 aaKnown RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 TXNDC9O14530 226 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 DENRO43583 198 aaKnown RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 CLPTM1O96005 669 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 VIL1P09327 827 aaKnown RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 ELK3P41970 407 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 OGDHQ02218 1023 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 AOC3Q16853 763 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 DUS1LQ6P1R4 473 aaKnown RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 SLC39A4Q6P5W5 647 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 AMIGO3Q86WK7 504 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 CRLF3Q8IUI8 442 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 ALDH16A1Q8IZ83 802 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 TAB3Q8N5C8 712 aaPredicted RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 ACTL9Q8TC94 416 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 GAB3Q8WWW8 586 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 RILPQ96NA2 401 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 RIT2Q99578 217 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 TIMMDC1Q9NPL8 285 aa11.15□□□□□ -0.63
USP54-204ENST00000422491 DDX18Q9NVP1 670 aaKnown RBP11.15□□□□□ -0.63
USP54-204ENST00000422491 CCDC195A0A1B0GUA6 201 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 C3orf70A6NLC5 250 aaPredicted RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 TRIM49D1C9J1S8 452 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 CYB561D2O14569 222 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 P4HBP07237 508 aaKnown RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 FDFT1P37268 417 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 OTUD4Q01804 1114 aaKnown RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 WASHC5Q12768 1159 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 RABGAP1LQ5R372 815 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 OGFRL1Q5TC84 451 aaPredicted RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 ICA1LQ8NDH6 482 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 TMEM161BQ8NDZ6 487 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 ZFP28Q8NHY6 868 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 ZNF516Q92618 1163 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 UBAP1Q9NZ09 502 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 EXOC7Q9UPT5 735 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 MAD1L1Q9Y6D9 718 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 TEX264Q9Y6I9 313 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 SF3B1O75533 1304 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP54-204ENST00000422491 TCRBV5S1A1TA0A578 114 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 STRNO43815 780 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 PDE5AO76074 875 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 POLR2MP0CAP2 368 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 RAG1P15918 1043 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 TTC39BQ5VTQ0 682 aaPredicted RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 APOBEC3HQ6NTF7 200 aaKnown RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 MIER3Q7Z3K6 550 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 USP37Q86T82 979 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 RAB3IL1Q8TBN0 382 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 ACTRT2Q8TDY3 377 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 USP6NLQ92738 828 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 PPP1R14BQ96C90 147 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 GCNAQ96QF7 691 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 KIFC3Q9BVG8 833 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 SENP6Q9GZR1 1112 aaPredicted RBP11.14□□□□□ -0.63
USP54-204ENST00000422491 MKS1Q9NXB0 559 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 CDH22Q9UJ99 828 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 POMPQ9Y244 141 aa11.14□□□□□ -0.63
USP54-204ENST00000422491 TMEM150BA6NC51 233 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 CAPN8A6NHC0 703 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 CD48P09326 243 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 MMP8P22894 467 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 GNA15P30679 374 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 EPHB1P54762 984 aa11.13□□□□□ -0.63
USP54-204ENST00000422491 ADARP55265 1226 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms