RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 CYP2A13Q16696 494 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 SLC5A9Q2M3M2 681 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ZIK1Q3SY52 487 aaPredicted RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 ARHGAP15Q53QZ3 475 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 FAXCQ5TGI0 409 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ABHD17BQ5VST6 288 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 MRNIPQ6NTE8 343 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 MZT2AQ6P582 158 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 TMEM108Q6UXF1 575 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 KIAA0408Q6ZU52 694 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 KCTD20Q7Z5Y7 419 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ANKRD18AQ8IVF6 992 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 CCDC28AQ8IWP9 274 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 GALNT15Q8N3T1 639 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 BPIFB1Q8TDL5 484 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 NEU4Q8WWR8 484 aaPredicted RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 SNX19Q92543 992 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 PTCD3Q96EY7 689 aaKnown RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 LRIG1Q96JA1 1093 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 SORBS1Q9BX66 1292 aaKnown RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 WDR11Q9BZH6 1224 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 SMOC2Q9H3U7 446 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 TMEM74BQ9NUR3 256 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 SAGE1Q9NXZ1 904 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 VSX1Q9NZR4 365 aaPredicted RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 DKK4Q9UBT3 224 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ZMYND8Q9ULU4 1186 aaPredicted RBP5.43□□□□□ -1.54
VPS54-204ENST00000416400 CCDC78A2IDD5 438 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 MARCH11A6NNE9 402 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 F5H697 171 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 TRIAP1O43715 76 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 SRGAP2O75044 1071 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 COQ9O75208 318 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 FSHBP01225 129 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 MAPK9P45984 424 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 DGKEP52429 567 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 PRKAG1P54619 331 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 MC2RQ01718 297 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 TAP1Q03518 808 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 MYO1EQ12965 1108 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 DYRK1AQ13627 763 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 KCNAB1Q14722 419 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 GEN1Q17RS7 908 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 ZNF750Q32MQ0 723 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 RAP1GAP2Q684P5 730 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 SP5Q6BEB4 398 aaPredicted RBP5.42□□□□□ -1.54
VPS54-204ENST00000416400 CCDC70Q6NSX1 233 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 RHOUQ7L0Q8 258 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 FAM9AQ8IZU1 332 aaPredicted RBP5.42□□□□□ -1.54
VPS54-204ENST00000416400 SPARTQ8N0X7 666 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 SUPT20HQ8NEM7 779 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 CAVIN3Q969G5 261 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 MLST8Q9BVC4 326 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 KATNAL1Q9BW62 490 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 SERHL2Q9H4I8 314 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 ZBTB26Q9HCK0 441 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 INTS13Q9NVM9 706 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 LZTS1Q9Y250 596 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 HPSEQ9Y251 543 aa5.42□□□□□ -1.54
VPS54-204ENST00000416400 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.42□□□□□ -1.54
VPS54-204ENST00000416400 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS54-204ENST00000416400 PIPSLA2A3N6 862 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 hCG_1984214I3L0E3 225 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 RGS10O43665 173 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 GLP2RO95838 553 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 ITGA2BP08514 1039 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 PECAM1P16284 738 aaPredicted RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 CD53P19397 219 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 ZFP36P26651 326 aaKnown RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 MST1P26927 711 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 PPIFP30405 207 aaKnown RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 NPTX2P47972 431 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 NDUFV1P49821 464 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 ARL4CP56559 192 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 NSUN2Q08J23 767 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS54-204ENST00000416400 HLXQ14774 488 aaPredicted RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 TIGD6Q17RP2 521 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 CD300EQ496F6 205 aaPredicted RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 TMTC4Q5T4D3 741 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 ARHGAP40Q5TG30 622 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 SFRP4Q6FHJ7 346 aaPredicted RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 TANGO2Q6ICL3 276 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 LIN54Q6MZP7 749 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 MICALCLQ6ZW33 695 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 TMPRSS9Q7Z410 1059 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 EID2BQ96D98 161 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 ADAM2Q99965 735 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 PTDSS2Q9BVG9 487 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 MAF1Q9H063 256 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 SLC25A32Q9H2D1 315 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 UNKLQ9H9P5 680 aaKnown RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 ITM2CQ9NQX7 267 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 RRN3Q9NYV6 651 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 C9orf78Q9NZ63 289 aaPredicted RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 ANAPC4Q9UJX5 808 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 NDRG4Q9ULP0 352 aaKnown RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 CA14Q9ULX7 337 aa5.41□□□□□ -1.54
VPS54-204ENST00000416400 MRPS17Q9Y2R5 130 aaKnown RBP5.41□□□□□ -1.54
VPS54-204ENST00000416400 HS3ST4Q9Y661 456 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms