RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RANBP17Q9H2T7 1088 aaKnown RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 RNPEPL1Q9HAU8 725 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 NKX1-2Q9UD57 310 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 H0YCG3 227 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 DNALI1O14645 258 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 XPO1O14980 1071 aaKnown RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 PLSCR1O15162 318 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 DGKIO75912 1065 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ZWINTO95229 277 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 CYP1A2P05177 515 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 GSTA2P09210 222 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ALOX15P16050 662 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ACTR2P61160 394 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 MAMLD1Q13495 774 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 DUOXA2Q1HG44 320 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ABRAQ8N0Z2 381 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 FLCNQ8NFG4 579 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 RNF34Q969K3 372 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 GFM2Q969S9 779 aaKnown RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 PDCD2LQ9BRP1 358 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 HESX1Q9UBX0 185 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ZMYM2Q9UBW7 1377 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 PAEPP09466 180 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 TCN1P20061 433 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 CCR3P51677 355 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 TFDP3Q5H9I0 405 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 SLFN12LQ6IEE8 588 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 HELQQ8TDG4 1101 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 STK32AQ8WU08 396 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ADAM7Q9H2U9 754 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 TBC1D23Q9NUY8 699 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ATXN10Q9UBB4 475 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 NOCTQ9UK39 431 aaKnown RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 FAM155BO75949 473 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 NFKBIAP25963 317 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ADSSP30520 456 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 POU5F1Q01860 360 aaKnown RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 GRIK3Q13003 919 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 NBPF12Q5TAG4 269 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-206ENST00000405805 TXNRD3NBQ6F5E7 133 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ZBTB46Q86UZ6 589 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 CYP26B1Q9NR63 512 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 CISHQ9NSE2 258 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 SENP1Q9P0U3 644 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 ATP11BQ9Y2G3 1177 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 CACNA1SQ13698 1873 aa12.42□□□□□ -0.42
HMGB1-206ENST00000405805 EXTL3O43909 919 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 KRT7P08729 469 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 EEF1B2P24534 225 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 TBXAS1P24557 533 aaPredicted RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 AQP5P55064 265 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 RASA2Q15283 850 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 LRRC8BQ6P9F7 803 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 EXD1Q8NHP7 514 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 PPWD1Q96BP3 646 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 CLPTM1LQ96KA5 538 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 RPF1Q9H9Y2 349 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 PRELID1Q9Y255 219 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 CHKBQ9Y259 395 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 SRRM3A6NNA2 597 aaPredicted RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 ICAM1P05362 532 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 SOX11P35716 441 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 MMRN1Q13201 1228 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 ACAP1Q15027 740 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 AMHR2Q16671 573 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 ZC3H12AQ5D1E8 599 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 TTC7BQ86TV6 843 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 SCG3Q8WXD2 468 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 GPR88Q9GZN0 384 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 DMAC2Q9NW81 257 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 APOBEC2Q9Y235 224 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 XIRP1Q702N8 1843 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 KBTBD13C9JR72 458 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 FCHO1O14526 889 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 PTPN4P29074 926 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 ABCG1P45844 678 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 GMPSP49915 693 aaPredicted RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 MAP3K7CLP57077 242 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 Q3C1V9 767 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 TDRD10Q5VZ19 366 aaKnown RBP12.41□□□□□ -0.42
HMGB1-206ENST00000405805 ATG16L1Q676U5 607 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 C16orf46Q6P387 395 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 TRABD2AQ86V40 505 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 PPIL6Q8IXY8 311 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 AS3MTQ9HBK9 375 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 ARHGEF38Q9NXL2 777 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 NHSL1Q5SYE7 1610 aa12.41□□□□□ -0.42
HMGB1-206ENST00000405805 A0A1B0GVG6 124 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 MAN1A2O60476 641 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 FESP07332 822 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 CCNFP41002 786 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 GPC3P51654 580 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 R3HDM1Q15032 1099 aaKnown RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 ANO4Q32M45 955 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 RFWD3Q6PCD5 774 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 TRIM72Q6ZMU5 477 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 KDELC2Q7Z4H8 507 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 OR6B3Q8NGW1 331 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 DENND2DQ9H6A0 471 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 DSEQ9UL01 958 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms