RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 NENFQ9UMX5 172 aa12.99□□□□□ -0.33
LINC00339-201ENST00000404210 YIPF1Q9Y548 306 aa12.99□□□□□ -0.33
LINC00339-201ENST00000404210 GREB1Q4ZG55 1949 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 SLC38A8A6NNN8 435 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 GABBR2O75899 941 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 SOAT2O75908 522 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 NDUFA10O95299 355 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 LRG1P02750 347 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 POU2F2P09086 479 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 HNRNPA1P09651 372 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ATF6P18850 670 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 MMP8P22894 467 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 GTF2F1P35269 517 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00339-201ENST00000404210 GPR15P49685 360 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 RGS7P49802 495 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 CCZ1BP86790 482 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 CCZ1P86791 482 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-201ENST00000404210 TWF1Q12792 350 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 PDCLQ13371 301 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ZNF268Q14587 947 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-201ENST00000404210 SDHAF4Q5VUM1 108 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ITIH5Q86UX2 942 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 MCOLN2Q8IZK6 566 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 GIPC2Q8TF65 315 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ZNF512Q96ME7 567 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-201ENST00000404210 CPXM1Q96SM3 734 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 CDX2Q99626 313 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-201ENST00000404210 FBXO44Q9H4M3 255 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ST7Q9NRC1 585 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 DZANK1Q9NVP4 752 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ZDHHC7Q9NXF8 308 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 TAS2R14Q9NYV8 317 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 ADAM22Q9P0K1 906 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 USP3Q9Y6I4 520 aa12.98□□□□□ -0.33
LINC00339-201ENST00000404210 FAM92AA1XBS5 289 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 TMCO5BA8MYB1 307 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 FBXO21O94952 628 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 CALB1P05937 261 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 SRGAP2BP0DMP2 458 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 LCP1P13796 627 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 MAGEA1P43355 309 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 TKTL1P51854 596 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 SLC5A3P53794 718 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 KRT83P78385 493 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 PTP4A2Q12974 167 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 VEPH1Q14D04 833 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 SPA17Q15506 151 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 PTPN20Q4JDL3 420 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 PM20D1Q6GTS8 502 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 LLGL2Q6P1M3 1020 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 DNAJB7Q7Z6W7 309 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-201ENST00000404210 ZDHHC17Q8IUH5 632 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 ELMOD1Q8N336 334 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 CMASQ8NFW8 434 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-201ENST00000404210 VN1R2Q8NFZ6 395 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 IPO4Q8TEX9 1081 aaKnown RBP12.97□□□□□ -0.33
LINC00339-201ENST00000404210 PSMG2Q969U7 264 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 MYRFLQ96LU7 910 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 TTLL2Q9BWV7 592 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 PRKD2Q9BZL6 878 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 CNGB3Q9NQW8 809 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 SPTLC3Q9NUV7 552 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 WDR35Q9P2L0 1181 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 INTUQ9ULD6 942 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 STRIP2Q9ULQ0 834 aa12.97□□□□□ -0.33
LINC00339-201ENST00000404210 CCDC195A0A1B0GUA6 201 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 ANKRD62A6NC57 917 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 E5RJQ4 531 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 ZNF263O14978 683 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 IPO7O95373 1038 aaKnown RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 ZBED1O96006 694 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 H2AFZP0C0S5 128 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 MYBL1P10243 752 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 HMGA1P17096 107 aaKnown RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 HOXB8P17481 243 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 PTPN2P17706 415 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 YWHAQP27348 245 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 MTF1Q14872 753 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 COL19A1Q14993 1142 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 TAF12Q16514 161 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 CTC1Q2NKJ3 1217 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 OR6B2Q6IFH4 312 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 ANKRD54Q6NXT1 300 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 H2AFVQ71UI9 128 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 Q7L0L9 218 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 MON1BQ7L1V2 547 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 GPRIN1Q7Z2K8 1008 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 SCUBE3Q8IX30 993 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 DEFB123Q8N688 67 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 SCAMP5Q8TAC9 235 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 GPR152Q8TDT2 470 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 IRGQQ8WZA9 623 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 TRIM11Q96F44 468 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 TRMT2BQ96GJ1 504 aaKnown RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 ZNF830Q96NB3 372 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 KCNF1Q9H3M0 494 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 SYNCQ9H7C4 482 aa12.96□□□□□ -0.33
LINC00339-201ENST00000404210 LUC7LQ9NQ29 371 aaKnown RBP12.96□□□□□ -0.33
LINC00339-201ENST00000404210 MTMR10Q9NXD2 777 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms