RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GOLGA8SH3BPF8 625 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 TMEM253P0C7T8 217 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 GABRB2P47870 512 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 CLCN4P51793 760 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 ADIGQ0VDE8 80 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 KIF5AQ12840 1032 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 TAF12Q16514 161 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 TMEM110Q86TL2 294 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 SCUBE3Q8IX30 993 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 GPR152Q8TDT2 470 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 GIPC2Q8TF65 315 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 PRDM12Q9H4Q4 367 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 TRMT1Q9NXH9 659 aaKnown RBP19.03■□□□□ 0.64
SDC1-203ENST00000403076 WDR35Q9P2L0 1181 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 ZKSCAN5Q9Y2L8 839 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 YIPF1Q9Y548 306 aa19.03■□□□□ 0.64
SDC1-203ENST00000403076 HHLA1C9JL84 531 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 CCP110O43303 1012 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 ATMINO43313 823 aaPredicted RBP19.02■□□□□ 0.64
SDC1-203ENST00000403076 PTP4A2Q12974 167 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 ZNF268Q14587 947 aaPredicted RBP19.02■□□□□ 0.64
SDC1-203ENST00000403076 GPRIN1Q7Z2K8 1008 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 ADGRD2Q7Z7M1 963 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 NUP93Q8N1F7 819 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 SLC7A14Q8TBB6 771 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 FBXW11Q9UKB1 542 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 TFR2Q9UP52 801 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 INSL5Q9Y5Q6 135 aa19.02■□□□□ 0.64
SDC1-203ENST00000403076 SPDYE4A6NLX3 237 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 LRG1P02750 347 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 RRM1P23921 792 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 NRIP1P48552 1158 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 RPL34P49207 117 aaKnown RBP19.01■□□□□ 0.63
SDC1-203ENST00000403076 SLC5A3P53794 718 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 TWF1Q12792 350 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 PLD1Q13393 1074 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 VEPH1Q14D04 833 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 ARHGAP29Q52LW3 1261 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 RAB41Q5JT25 222 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 ZNF697Q5TEC3 545 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 DNAJC24Q6P3W2 148 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 ELMSAN1Q6PJG2 1045 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 DENND5BQ6ZUT9 1274 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 XYLT1Q86Y38 959 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 STKLD1Q8NE28 680 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 SPATA17Q96L03 361 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 CTTNBP2NLQ9P2B4 639 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 CHORDC1Q9UHD1 332 aaPredicted RBP19.01■□□□□ 0.63
SDC1-203ENST00000403076 PTPRDP23468 1912 aa19.01■□□□□ 0.63
SDC1-203ENST00000403076 RANBP2P49792 3224 aaKnown RBP19.01■□□□□ 0.63
SDC1-203ENST00000403076 RCCD1A6NED2 376 aa19■□□□□ 0.63
SDC1-203ENST00000403076 PAPSS1O43252 624 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 KRT86O43790 486 aa19■□□□□ 0.63
SDC1-203ENST00000403076 GABBR2O75899 941 aa19■□□□□ 0.63
SDC1-203ENST00000403076 FBXO21O94952 628 aa19■□□□□ 0.63
SDC1-203ENST00000403076 RTN3O95197 1032 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 C1RP00736 705 aa19■□□□□ 0.63
SDC1-203ENST00000403076 C8AP07357 584 aa19■□□□□ 0.63
SDC1-203ENST00000403076 EPCAMP16422 314 aa19■□□□□ 0.63
SDC1-203ENST00000403076 ATF6P18850 670 aa19■□□□□ 0.63
SDC1-203ENST00000403076 EPHB3P54753 998 aa19■□□□□ 0.63
SDC1-203ENST00000403076 NAP1L1P55209 391 aaKnown RBP19■□□□□ 0.63
SDC1-203ENST00000403076 LLGL2Q6P1M3 1020 aa19■□□□□ 0.63
SDC1-203ENST00000403076 FAM183BPQ6ZVS7 135 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SCAMP5Q8TAC9 235 aa19■□□□□ 0.63
SDC1-203ENST00000403076 ARHGEF26Q96DR7 871 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SELENOOQ9BVL4 669 aa19■□□□□ 0.63
SDC1-203ENST00000403076 ULBP1Q9BZM6 244 aa19■□□□□ 0.63
SDC1-203ENST00000403076 TSGA10Q9BZW7 698 aa19■□□□□ 0.63
SDC1-203ENST00000403076 LACRTQ9GZZ8 138 aa19■□□□□ 0.63
SDC1-203ENST00000403076 TTYH1Q9H313 450 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 PLEKHA4Q9H4M7 779 aa19■□□□□ 0.63
SDC1-203ENST00000403076 IGFLR1Q9H665 355 aa19■□□□□ 0.63
SDC1-203ENST00000403076 LZTFL1Q9NQ48 299 aa19■□□□□ 0.63
SDC1-203ENST00000403076 CNGB3Q9NQW8 809 aa19■□□□□ 0.63
SDC1-203ENST00000403076 MAN1C1Q9NR34 630 aa19■□□□□ 0.63
SDC1-203ENST00000403076 PARVAQ9NVD7 372 aa19■□□□□ 0.63
SDC1-203ENST00000403076 DPP7Q9UHL4 492 aa19■□□□□ 0.63
SDC1-203ENST00000403076 MAGED2Q9UNF1 606 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 A0A0U1RQJ8 604 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SLC38A8A6NNN8 435 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SOX1O00570 391 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 TNFRSF10BO14763 440 aa19■□□□□ 0.63
SDC1-203ENST00000403076 PJA2O43164 708 aa19■□□□□ 0.63
SDC1-203ENST00000403076 ZBED1O96006 694 aa19■□□□□ 0.63
SDC1-203ENST00000403076 CYP1A2P05177 515 aa19■□□□□ 0.63
SDC1-203ENST00000403076 USP17L7P0C7H9 530 aa19■□□□□ 0.63
SDC1-203ENST00000403076 NOP2P46087 812 aaKnown RBP19■□□□□ 0.63
SDC1-203ENST00000403076 SLC6A3Q01959 620 aa19■□□□□ 0.63
SDC1-203ENST00000403076 GRIN2CQ14957 1233 aa19■□□□□ 0.63
SDC1-203ENST00000403076 PPM1LQ5SGD2 360 aa19■□□□□ 0.63
SDC1-203ENST00000403076 FAM102AQ5T9C2 384 aaPredicted RBP19■□□□□ 0.63
SDC1-203ENST00000403076 ZDHHC17Q8IUH5 632 aa19■□□□□ 0.63
SDC1-203ENST00000403076 CCAR2Q8N163 923 aaKnown RBP19■□□□□ 0.63
SDC1-203ENST00000403076 KIAA1524Q8TCG1 905 aa19■□□□□ 0.63
SDC1-203ENST00000403076 SLC22A17Q8WUG5 538 aa19■□□□□ 0.63
SDC1-203ENST00000403076 ATRIPQ8WXE1 791 aa19■□□□□ 0.63
SDC1-203ENST00000403076 MCRS1Q96EZ8 462 aa19■□□□□ 0.63
SDC1-203ENST00000403076 CEP295NLQ96MC4 621 aa19■□□□□ 0.63
SDC1-203ENST00000403076 FBXO44Q9H4M3 255 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms