RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 VCPIP1Q96JH7 1222 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 DCUN1D5Q9BTE7 237 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 ITGA8P53708 1063 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 FAM92BQ6ZTR7 304 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 SGMS1Q86VZ5 419 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 CENPLQ8N0S6 344 aaPredicted RBP13.02□□□□□ -0.32
COL6A3-203ENST00000353578 FAM118BQ9BPY3 351 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 KCTD14Q9BQ13 255 aaPredicted RBP13.02□□□□□ -0.32
COL6A3-203ENST00000353578 GANQ9H2C0 597 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 PNPLA8Q9NP80 782 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 NCK2O43639 380 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 RASA1P20936 1047 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 AGAP11Q8TF27 550 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 CEP170P1Q96L14 293 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 IRAK3Q9Y616 596 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 RECQL5O94762 991 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 CAMTA2O94983 1202 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 CCNHP51946 323 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 FRG1Q14331 258 aaKnown RBP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 FAAH2Q6GMR7 532 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 DGKHQ86XP1 1220 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 CENPIQ92674 756 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 GLG1Q92896 1179 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 IFT43Q96FT9 208 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 PLEKHG4BQ96PX9 1271 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 MCUBQ9NWR8 336 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 FOSL1P15407 271 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 COILP38432 576 aaPredicted RBP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 MS4A14Q96JA4 679 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 DBR1Q9UK59 544 aaKnown RBP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 SYNPO2Q9UMS6 1093 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 ZDHHC9Q9Y397 364 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 TRIM64CA6NLI5 447 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 WWP2O00308 870 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 CCNKO75909 580 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 SERPINE1P05121 402 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 GZMAP12544 262 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 SCN1BQ07699 218 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 PABPC4Q13310 644 aaKnown RBP eCLIP13.02□□□□□ -0.33
COL6A3-203ENST00000353578 TBCKQ8TEA7 893 aa13.02□□□□□ -0.33
COL6A3-203ENST00000353578 MYL12BO14950 172 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 MAGEB2O15479 319 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 PSAPP07602 524 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 KCTD21Q4G0X4 260 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 C4orf33Q8N1A6 199 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 KRT78Q8N1N4 520 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 RNF139Q8WU17 664 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 CDCA7Q9BWT1 371 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 PCDHB6Q9Y5E3 794 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 A2ML1A8K2U0 1454 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 FAM220BPB1ANY3 271 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 FAM228BP0C875 321 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 TSHRP16473 764 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 OGNP20774 298 aaKnown RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 AQP5P55064 265 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 RYBPQ8N488 228 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 PRDM16Q9HAZ2 1276 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 PCDHB8Q9UN66 801 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 CORO2BQ9UQ03 480 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 KRT36O76013 467 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF844Q08AG5 666 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 SLC26A11Q86WA9 606 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 TPCN2Q8NHX9 752 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 GPN1Q9HCN4 374 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 MARCOQ9UEW3 520 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 GNPTGQ9UJJ9 305 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ATF4P18848 351 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 PSMB9P28065 219 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 TAF8Q7Z7C8 310 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ACAT2Q9BWD1 397 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 MYLK2Q9H1R3 596 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 TASP1Q9H6P5 420 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ENTPD7Q9NQZ7 604 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ARHGEF38Q9NXL2 777 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 SOAT2O75908 522 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 PTCD3Q96EY7 689 aaKnown RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 TMEM237Q96Q45 408 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF577Q9BSK1 485 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 SLITRK2Q9H156 845 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ZNF180Q9UJW8 692 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ALDH1A3P47895 512 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 C12orf56Q8IXR9 622 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 CCDC185Q8N715 623 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ZHX1-C8orf76Q96EF9 292 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 NUDT12Q9BQG2 462 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 APRTP07741 180 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 GNA15P30679 374 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 POLA2Q14181 598 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 METTL16Q86W50 562 aaKnown RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 THNSL1Q8IYQ7 743 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 GRAMD1CQ8IYS0 662 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ERMAPQ96PL5 475 aaPredicted RBP13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ZSWIM1Q9BR11 485 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 HSPBP1Q9NZL4 362 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 SUGT1Q9Y2Z0 365 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 ABHD2P08910 425 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 NPR2P20594 1047 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 MAGEA2P43356 314 aa13.01□□□□□ -0.33
COL6A3-203ENST00000353578 CSNK2BP67870 215 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms