RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SRFBP1Q8NEF9 429 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CCNB1IP1Q9NPC3 277 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 INTS13Q9NVM9 706 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SUCLA2Q9P2R7 463 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SMIM31A0A1B0GVY4 71 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 GYG2O15488 501 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NPTXRO95502 500 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HSPA4LO95757 839 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TCF3P15923 654 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NR1D1P20393 614 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 WARSP23381 471 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 PPIL2Q13356 520 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CCINQ13939 588 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NFIXQ14938 502 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SPATS1Q496A3 300 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF394Q53GI3 561 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF658Q5TYW1 1059 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 LLGL2Q6P1M3 1020 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 C16orf62Q7Z3J2 963 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TTC29Q8NA56 475 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FBXO18Q8NFZ0 1043 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TTC8Q8TAM2 541 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TAF1DQ9H5J8 278 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NEUROD4Q9HD90 331 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SAGE1Q9NXZ1 904 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 VPS51Q9UID3 782 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 NFE2L3Q9Y4A8 694 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 IRAK3Q9Y616 596 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 hCG_1642624A0A1W2PR95 340 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ERI2A8K979 691 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 KPNA4O00629 521 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RGS20O76081 388 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 SOX30O94993 753 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ANXA6P08133 673 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 ACADLP28330 430 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 RGS4P49798 205 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 TRIP10Q15642 601 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FOXD4L6Q3SYB3 417 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 FOXD4L3Q6VB84 417 aaPredicted RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 YTHDF3Q7Z739 585 aaKnown RBP3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HELQQ8TDG4 1101 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 POMGNT1Q8WZA1 660 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 HLA-CQ95604 372 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 OMA1Q96E52 524 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 THAP9Q9H5L6 903 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 BFARQ9NZS9 450 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 L3MBTL1Q9Y468 752 aa3.41□□□□□ -1.86
CSMD3-202ENST00000339701 CACNA1GO43497 2377 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 VPS4BO75351 444 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF202O95125 648 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CYP2C9P11712 490 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CD19P15391 556 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 AFMP43652 599 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 HARS2P49590 506 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 MAPRE1Q15691 268 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CNGA3Q16281 694 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 RFTN2Q52LD8 501 aaPredicted RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 SYDE2Q5VT97 1194 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 UNC13DQ70J99 1090 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 ASIC4Q96FT7 647 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 OSBPL6Q9BZF3 934 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 MRPL44Q9H9J2 332 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 EFCAB1Q9HAE3 211 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 TIMMDC1Q9NPL8 285 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CNGB3Q9NQW8 809 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 KLF18A0A0U1RQI7 1052 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 GPR25O00155 361 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 RHOBTB3O94955 611 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 ITGA4P13612 1032 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PTX3P26022 381 aaPredicted RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 SKIV2L2P42285 1042 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PEX5P50542 639 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 USP4Q13107 963 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 TTLL9Q3SXZ7 439 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 LONRF3Q496Y0 759 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 USP39Q53GS9 565 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 TMEM31Q5JXX7 168 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 STRA8Q7Z7C7 330 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PEG10Q86TG7 708 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 METTL16Q86W50 562 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 NT5C1BQ96P26 610 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 NR1H4Q96RI1 486 aaPredicted RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 OMDQ99983 421 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 FICDQ9BVA6 458 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 RETREG1Q9H6L5 497 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PIN4Q9Y237 131 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 ST14Q9Y5Y6 855 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CAPN7Q9Y6W3 813 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PRRC2BQ5JSZ5 2229 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CNTNAP4Q9C0A0 1308 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 USP42Q9H9J4 1324 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 K7ERI5 159 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CFIP05156 583 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 RFC2P35250 354 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CASP5P51878 434 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 TGM3Q08188 693 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 EFTUD2Q15029 972 aaKnown RBP eCLIP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 PABPC1LQ4VXU2 614 aaKnown RBP3.4□□□□□ -1.86
CSMD3-202ENST00000339701 C2CD6Q53TS8 623 aa3.4□□□□□ -1.86
CSMD3-202ENST00000339701 CHRDL2Q6WN34 429 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms