RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 KIAA0319LQ8IZA0 1049 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 SPATA4Q8NEY3 305 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 TATDN2Q93075 761 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 GBP5Q96PP8 586 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 DNAJC7Q99615 494 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 C6orf203Q9P0P8 240 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 USP2O75604 605 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 USP17L7P0C7H9 530 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 AARSP49588 968 aaKnown RBP eCLIP14.01□□□□□ -0.17
RFFL-201ENST00000315249 NR1H4Q96RI1 486 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 RUBCNLQ9H714 662 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 DMAP1Q9NPF5 467 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 ARIH2O95376 493 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 PDE1CQ14123 709 aaPredicted RBP14.01□□□□□ -0.17
RFFL-201ENST00000315249 LINC00523Q86TU6 105 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 SENP8Q96LD8 212 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 SPASTQ9UBP0 616 aa14.01□□□□□ -0.17
RFFL-201ENST00000315249 FGFR1P11362 822 aa14□□□□□ -0.17
RFFL-201ENST00000315249 PTK6Q13882 451 aa14□□□□□ -0.17
RFFL-201ENST00000315249 NOMO2Q5JPE7 1267 aa14□□□□□ -0.17
RFFL-201ENST00000315249 RXFP2Q8WXD0 754 aa14□□□□□ -0.17
RFFL-201ENST00000315249 FTHL17Q9BXU8 183 aa14□□□□□ -0.17
RFFL-201ENST00000315249 MED1Q15648 1581 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 ARL8AQ96BM9 186 aa14□□□□□ -0.17
RFFL-201ENST00000315249 PKD2L2Q9NZM6 624 aa14□□□□□ -0.17
RFFL-201ENST00000315249 TRMT6Q9UJA5 497 aaKnown RBP14□□□□□ -0.17
RFFL-201ENST00000315249 MDM2Q00987 491 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 SYDE1Q6ZW31 735 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 C9orf72Q96LT7 481 aa14□□□□□ -0.17
RFFL-201ENST00000315249 IRX2Q9BZI1 471 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 PCMTD2Q9NV79 361 aa14□□□□□ -0.17
RFFL-201ENST00000315249 NPM3O75607 178 aaKnown RBP14□□□□□ -0.17
RFFL-201ENST00000315249 CXCL14O95715 111 aa14□□□□□ -0.17
RFFL-201ENST00000315249 CLCN6P51797 869 aa14□□□□□ -0.17
RFFL-201ENST00000315249 ZNF200P98182 395 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 CLEC16AQ2KHT3 1053 aa14□□□□□ -0.17
RFFL-201ENST00000315249 PIP4K2CQ8TBX8 421 aa14□□□□□ -0.17
RFFL-201ENST00000315249 WDR18Q9BV38 432 aa14□□□□□ -0.17
RFFL-201ENST00000315249 NEUROG2Q9H2A3 272 aa14□□□□□ -0.17
RFFL-201ENST00000315249 ST3GAL5Q9UNP4 418 aa14□□□□□ -0.17
RFFL-201ENST00000315249 USP27XA6NNY8 438 aa14□□□□□ -0.17
RFFL-201ENST00000315249 NDUFS2O75306 463 aa14□□□□□ -0.17
RFFL-201ENST00000315249 MICAL2O94851 1124 aa14□□□□□ -0.17
RFFL-201ENST00000315249 GABPB1Q06547 395 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 SCUBE3Q8IX30 993 aa14□□□□□ -0.17
RFFL-201ENST00000315249 ADGRE3Q9BY15 652 aa14□□□□□ -0.17
RFFL-201ENST00000315249 PDGFCQ9NRA1 345 aa14□□□□□ -0.17
RFFL-201ENST00000315249 UBP1Q9NZI7 540 aa14□□□□□ -0.17
RFFL-201ENST00000315249 EPB41L3Q9Y2J2 1087 aaPredicted RBP14□□□□□ -0.17
RFFL-201ENST00000315249 A8MX80 341 aa14□□□□□ -0.17
RFFL-201ENST00000315249 TTLL9Q3SXZ7 439 aa14□□□□□ -0.17
RFFL-201ENST00000315249 SLC2A14Q8TDB8 520 aa14□□□□□ -0.17
RFFL-201ENST00000315249 APOL2Q9BQE5 337 aa14□□□□□ -0.17
RFFL-201ENST00000315249 C5orf58C9J3I9 102 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SMIM22K7EJ46 135 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SPATA31D3P0C874 917 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 ZNF697Q5TEC3 545 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SPATA31D4Q6ZUB0 917 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 TFR2Q9UP52 801 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 AP4E1Q9UPM8 1137 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 TRIM66O15016 1216 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 DCTN3O75935 186 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 AKAP3O75969 853 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SHROOM1Q2M3G4 852 aaPredicted RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 C6orf10Q5SRN2 563 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 BEND6Q5SZJ8 279 aaPredicted RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 HPS4Q9NQG7 708 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 RAD18Q9NS91 495 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 A0A1B0GUA9 196 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 KPNA3O00505 521 aaPredicted RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 GYG2O15488 501 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SOAT1P35610 550 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 VSIG10LQ86VR7 867 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SKA1Q96BD8 255 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 CELF6Q96J87 481 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 PNMA5Q96PV4 448 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 ELOVL4Q9GZR5 314 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 KCTD10Q9H3F6 313 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SNX12Q9UMY4 172 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 UMODL1Q5DID0 1318 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SETSIPP0DME0 302 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 ERVK-10P10266 1014 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 EIF4BP23588 611 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 RFX3P48380 749 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 KCNA10Q16322 511 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 UGT3A1Q6NUS8 523 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 CCDC149Q6ZUS6 474 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 AHCYL2Q96HN2 611 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 TGS1Q96RS0 853 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 CELF4Q9BZC1 486 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 SMARCAL1Q9NZC9 954 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SF3B1O75533 1304 aaKnown RBP eCLIP13.99□□□□□ -0.175e-6■■■■■ 88.1
RFFL-201ENST00000315249 CYTH3O43739 400 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SRP72O76094 671 aaKnown RBP13.99□□□□□ -0.17
RFFL-201ENST00000315249 TGM2P21980 687 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 GEMP55040 296 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 BTKQ06187 659 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 SEMA6BQ9H3T3 888 aa13.99□□□□□ -0.17
RFFL-201ENST00000315249 ASAH2Q9NR71 780 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms