RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 ULBP1Q9BZM6 244 aa9.65□□□□□ -0.86
PTPRE-202ENST00000306042 THAP2Q9H0W7 228 aa9.65□□□□□ -0.86
PTPRE-202ENST00000306042 NDFIP2Q9NV92 336 aa9.65□□□□□ -0.86
PTPRE-202ENST00000306042 ARHGAP28Q9P2N2 729 aa9.65□□□□□ -0.86
PTPRE-202ENST00000306042 ASTN1O14525 1302 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 SLX4Q8IY92 1834 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 EXOC1LA0A1B0GW35 172 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 TBC1D3BA6NDS4 549 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 ARL5CA6NH57 179 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 F8VP50 259 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 CBX4O00257 560 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 NPR3P17342 541 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 CDC25CP30307 473 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 TRIM32Q13049 653 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 EIF2B5Q13144 721 aaKnown RBP9.65□□□□□ -0.87
PTPRE-202ENST00000306042 SH3RF1Q7Z6J0 888 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 EMC1Q8N766 993 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 OR5B17Q8NGF7 314 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 SPATA18Q8TC71 538 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 OSBPL9Q96SU4 736 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 GPR63Q9BZJ6 419 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 ABCC13Q9NSE7 274 aa9.65□□□□□ -0.87
PTPRE-202ENST00000306042 AKAP7Q9P0M2 348 aaPredicted RBP9.65□□□□□ -0.87
PTPRE-202ENST00000306042 THSD7AQ9UPZ6 1657 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 GEMIN4P57678 1058 aaKnown RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 DLG4P78352 724 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 LAMB3Q13751 1172 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 NT5DC1Q5TFE4 455 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 CCDC137Q6PK04 289 aaKnown RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 DDX42Q86XP3 938 aaKnown RBP eCLIP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 SCUBE3Q8IX30 993 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 SH3KBP1Q96B97 665 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 FAM161BQ96MY7 647 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 PTPN18Q99952 460 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 OSBPL8Q9BZF1 889 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 PGAP2Q9UHJ9 254 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 INTUQ9ULD6 942 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ALG6Q9Y672 507 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ZMYND10O75800 440 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ENDOD1O94919 500 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 MT-ND3P03897 115 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 RRM1P23921 792 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ARHGAP25P42331 645 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 PSEN1P49768 467 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 CBWD6Q4V339 395 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 CBWD3Q5JTY5 395 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 CBWD5Q5RIA9 395 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 NUGGCQ68CJ6 796 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 SUGP1Q8IWZ8 645 aaKnown RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 PPHLN1Q8NEY8 458 aaKnown RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 TUBGCP4Q9UGJ1 667 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 AP4E1Q9UPM8 1137 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 LZTS3O60299 673 aaPredicted RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ARSEP51690 589 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 RHOAP61586 193 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 CAV1Q03135 178 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 NUP93Q8N1F7 819 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 RIPOR3Q96MK2 946 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 SAMD11Q96NU1 681 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 DUSP9Q99956 384 aaKnown RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 OXCT2Q9BYC2 517 aaPredicted RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 UBXN6Q9BZV1 441 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 NUDT5Q9UKK9 219 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 CFAP99D6REC4 459 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ZBTB22O15209 634 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 FGF19O95750 216 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 RALBP11234 206 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 GABRR2P28476 465 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 DUSP4Q13115 394 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ZNF268Q14587 947 aaPredicted RBP9.64□□□□□ -0.87
PTPRE-202ENST00000306042 FIGNQ5HY92 759 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 ECHDC2Q86YB7 292 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 RAB42Q8N4Z0 105 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 SLC20A1Q8WUM9 679 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 RILPQ96NA2 401 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 POPDC2Q9HBU9 364 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 DNMT3LQ9UJW3 386 aa9.64□□□□□ -0.87
PTPRE-202ENST00000306042 KIF3CO14782 793 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 EPHB4P54760 987 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 SESN2P58004 480 aaPredicted RBP9.63□□□□□ -0.87
PTPRE-202ENST00000306042 C1QBPQ07021 282 aaKnown RBP9.63□□□□□ -0.87
PTPRE-202ENST00000306042 SLC45A4Q5BKX6 768 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 CDKAL1Q5VV42 579 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 NXNQ6DKJ4 435 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 TPGS1Q6ZTW0 290 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 ATL2Q8NHH9 583 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 EXT2Q93063 718 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 A0A087X0T9 212 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 B4GALT4O60513 344 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 ATP5BP06576 529 aaKnown RBP9.63□□□□□ -0.87
PTPRE-202ENST00000306042 APRTP07741 180 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 FAM228BP0C875 321 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 RBP3P10745 1247 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 NUMBP49757 651 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 PDK2Q15119 407 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 CLEC16AQ2KHT3 1053 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 ZACNQ401N2 412 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 DEFB106AQ8N104 65 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 KRT35Q92764 455 aa9.63□□□□□ -0.87
PTPRE-202ENST00000306042 TRIM54Q9BYV2 358 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms