RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 PPP4R4Q6NUP7 873 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 PRUNE1Q86TP1 453 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 HERC6Q8IVU3 1022 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 CHCHD3Q9NX63 227 aaKnown RBP19.22■□□□□ 0.67
PCDH1-201ENST00000287008 RRN3Q9NYV6 651 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 STOML1Q9UBI4 398 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 TRAF3IP3Q9Y228 551 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 NRCAMQ92823 1304 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 TBC1D12O60347 775 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 SYNCRIPO60506 623 aaKnown RBP19.22■□□□□ 0.67
PCDH1-201ENST00000287008 WEE1P30291 646 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 MCL1Q07820 350 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 UGT3A1Q6NUS8 523 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 LRRC6Q86X45 466 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 CCNJLQ8IV13 435 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 ABRAQ8N0Z2 381 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 SRPK1Q96SB4 655 aaKnown RBP19.22■□□□□ 0.67
PCDH1-201ENST00000287008 DNAJC7Q99615 494 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 TRMT6Q9UJA5 497 aaKnown RBP19.22■□□□□ 0.67
PCDH1-201ENST00000287008 TSPAN16Q9UKR8 245 aa19.22■□□□□ 0.67
PCDH1-201ENST00000287008 CTCFP49711 727 aaPredicted RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 FAM83EQ2M2I3 478 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 USP18Q9UMW8 372 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 C5orf58C9J3I9 102 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 EML1O00423 815 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 JCHAINP01591 159 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 TUFMP49411 452 aaKnown RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 CSE1LP55060 971 aaKnown RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 PNMA5Q96PV4 448 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 GAD1Q99259 594 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 STN1Q9H668 368 aaKnown RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 TCP11X1B4DZS4 312 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 PROSCO94903 275 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 CXorf38Q8TB03 319 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 ZNF606Q8WXB4 792 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 KLF6Q99612 283 aaPredicted RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 ROPN1BQ9BZX4 212 aaPredicted RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 ROPN1Q9HAT0 212 aaPredicted RBP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 MRGBPQ9NV56 204 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 MAP2K5Q13163 448 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 CUL3Q13618 768 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 LRRC8EQ6NSJ5 796 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 DDX42Q86XP3 938 aaKnown RBP eCLIP19.21■□□□□ 0.67
PCDH1-201ENST00000287008 TAGAPQ8N103 731 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 ARL8AQ96BM9 186 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 PPP1R36Q96LQ0 422 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 UMODL1Q5DID0 1318 aa19.21■□□□□ 0.67
PCDH1-201ENST00000287008 CBX4O00257 560 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 MEFVO15553 781 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 SOAT2O75908 522 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 EIF4BP23588 611 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 EARS2Q5JPH6 523 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 TATDN2Q93075 761 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 KCNF1Q9H3M0 494 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 DMAP1Q9NPF5 467 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 ANLNQ9NQW6 1124 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 KIF17Q9P2E2 1029 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 CARNS1A5YM72 827 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 HNRNPCL2B2RXH8 293 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 HNRNPCL1O60812 293 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 GCKP35557 465 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 LRIG3Q6UXM1 1119 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 SLC47A2Q86VL8 602 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 TRPM4Q8TD43 1214 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 PGLYRP2Q96PD5 576 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 XYLBO75191 536 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 ALDH1A2O94788 518 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 PGK1P00558 417 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 GEMIN4P57678 1058 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 STARD3Q14849 445 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 CELF3Q5SZQ8 465 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 EFL1Q7Z2Z2 1120 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 ELOVL4Q9GZR5 314 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 ZCCHC17Q9NP64 241 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 PPP1R37O75864 691 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 ITGALP20701 1170 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 OTUD4Q01804 1114 aaKnown RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 HIST2H2ACQ16777 129 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 MROH9Q5TGP6 573 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 HIST2H2AA3Q6FI13 130 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 SPATA21Q7Z572 469 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 CCDC60Q8IWA6 550 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 RIBC1Q8N443 379 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 FAM129AQ9BZQ8 928 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 BRD8Q9H0E9 1235 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 SMPD4Q9NXE4 827 aa19.2■□□□□ 0.66
PCDH1-201ENST00000287008 MARCOQ9UEW3 520 aaPredicted RBP19.2■□□□□ 0.66
PCDH1-201ENST00000287008 ZSCAN9O15535 394 aaPredicted RBP19.19■□□□□ 0.66
PCDH1-201ENST00000287008 CLASP2O75122 1294 aaKnown RBP19.19■□□□□ 0.66
PCDH1-201ENST00000287008 NPM3O75607 178 aaKnown RBP19.19■□□□□ 0.66
PCDH1-201ENST00000287008 RECQL4O94761 1208 aa19.19■□□□□ 0.66
PCDH1-201ENST00000287008 CARSP49589 748 aaKnown RBP19.19■□□□□ 0.66
PCDH1-201ENST00000287008 C1QBPQ07021 282 aaKnown RBP19.19■□□□□ 0.66
PCDH1-201ENST00000287008 SMARCD1Q96GM5 515 aa19.19■□□□□ 0.66
PCDH1-201ENST00000287008 YWHAZP63104 245 aaKnown RBP19.19■□□□□ 0.66
PCDH1-201ENST00000287008 POU4F1Q01851 419 aa19.19■□□□□ 0.66
PCDH1-201ENST00000287008 GCNT1Q02742 428 aa19.19■□□□□ 0.66
PCDH1-201ENST00000287008 MAPK7Q13164 816 aa19.19■□□□□ 0.66
PCDH1-201ENST00000287008 EDEM1Q92611 657 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms