RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	PRY2	P36110	329 aa		4.58	□□□□□ -1.68
RPT3	YDR394W	RPF1	P38805	295 aa	Known RBP	4.58	□□□□□ -1.68
RPT3	YDR394W	SIM1	P40472	476 aa		4.58	□□□□□ -1.68
RPT3	YDR394W	DCV1	P43595	202 aa		4.58	□□□□□ -1.68
RPT3	YDR394W	FIP1	P45976	327 aa		4.58	□□□□□ -1.68
RPT3	YDR394W	ALG13	P53178	202 aa		4.58	□□□□□ -1.68
RPT3	YDR394W	YKL023C-A	Q2V2P3	75 aa		4.58	□□□□□ -1.68
RPT3	YDR394W	DUO1	P53168	247 aa	Known RBP	4.57	□□□□□ -1.68
RPT3	YDR394W	TAR1	Q8TGM6	124 aa		4.57	□□□□□ -1.68
RPT3	YDR394W	RPL32	P38061	130 aa	Known RBP	4.56	□□□□□ -1.68
RPT3	YDR394W	YLR296W	Q05898	108 aa		4.56	□□□□□ -1.68
RPT3	YDR394W	TMA7	Q3E764	64 aa	Known RBP	4.56	□□□□□ -1.68
RPT3	YDR394W	CCW14	O13547	238 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	RPL2A	P0CX45	254 aa	Known RBP	4.55	□□□□□ -1.68
RPT3	YDR394W	RPL2B	P0CX46	254 aa	Known RBP	4.55	□□□□□ -1.68
RPT3	YDR394W	CUP1-1	P0CX80	61 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	CUP1-2	P0CX81	61 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	YHR212W-A	P0CX91	67 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	MPC2	P38857	129 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	YJR146W	P47174	117 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	ELC1	Q03071	99 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	YLR042C	Q07990	161 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	YPL261C	Q08976	102 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	YIL102C-A	Q2V2P5	75 aa		4.55	□□□□□ -1.68
RPT3	YDR394W	TRP1	P00912	224 aa		4.54	□□□□□ -1.68
RPT3	YDR394W	RPS11A	P0CX47	156 aa	Known RBP	4.54	□□□□□ -1.68
RPT3	YDR394W	RPS11B	P0CX48	156 aa	Known RBP	4.54	□□□□□ -1.68
RPT3	YDR394W	ANB1	P19211	157 aa		4.54	□□□□□ -1.68
RPT3	YDR394W	RPL16A	P26784	199 aa	Known RBP	4.54	□□□□□ -1.68
RPT3	YDR394W	YKR041W	P36134	250 aa		4.54	□□□□□ -1.68
RPT3	YDR394W	RRT13	P40042	185 aa		4.54	□□□□□ -1.68
RPT3	YDR394W	YNL217W	P40152	326 aa		4.54	□□□□□ -1.68
RPT3	YDR394W	AIM11	P87275	137 aa		4.54	□□□□□ -1.68
RPT3	YDR394W	DFM1	Q12743	341 aa	Known RBP	4.54	□□□□□ -1.68
RPT3	YDR394W	YBR144C	P34215	104 aa		4.53	□□□□□ -1.68
RPT3	YDR394W	ECM33	P38248	429 aa	Known RBP	4.53	□□□□□ -1.68
RPT3	YDR394W	VHS2	P40463	436 aa		4.53	□□□□□ -1.68
RPT3	YDR394W	YFR035C	P43608	114 aa		4.53	□□□□□ -1.68
RPT3	YDR394W	IGO2	Q9P305	131 aa		4.53	□□□□□ -1.68
RPT3	YDR394W	RPS8A	P0CX39	200 aa	Known RBP	4.52	□□□□□ -1.69
RPT3	YDR394W	RPS8B	P0CX40	200 aa	Known RBP	4.52	□□□□□ -1.69
RPT3	YDR394W	YDL186W	P48568	277 aa		4.52	□□□□□ -1.69
RPT3	YDR394W	PAI3	P01094	68 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YDL022C-A	P0C5L6	82 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	ATP15	P21306	62 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YEL067C	P39978	195 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YER181C	P40097	107 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YNL198C	P40166	100 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YNR077C	P53758	84 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YLR194C	Q05777	254 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YBR126W-A	Q8TGU7	68 aa		4.51	□□□□□ -1.69
RPT3	YDR394W	YCL042W	P25572	119 aa		4.5	□□□□□ -1.69
RPT3	YDR394W	OXA1	P39952	402 aa		4.5	□□□□□ -1.69
RPT3	YDR394W	PEX17	P40155	199 aa		4.5	□□□□□ -1.69
RPT3	YDR394W	PMP3	P87284	55 aa		4.5	□□□□□ -1.69
RPT3	YDR394W	YGR035W-A	Q45U48	73 aa		4.5	□□□□□ -1.69
RPT3	YDR394W	UBC5	P15732	148 aa		4.49	□□□□□ -1.69
RPT3	YDR394W	HYP2	P23301	157 aa	Known RBP	4.49	□□□□□ -1.69
RPT3	YDR394W	POP7	P38291	140 aa		4.49	□□□□□ -1.69
RPT3	YDR394W	YPS5	P53057	165 aa		4.49	□□□□□ -1.69
RPT3	YDR394W	YDR274C	P87283	123 aa		4.49	□□□□□ -1.69
RPT3	YDR394W	YOR097C	Q12274	175 aa	Predicted RBP	4.49	□□□□□ -1.69
RPT3	YDR394W	YCR075W-A	Q3E830	75 aa		4.49	□□□□□ -1.69
RPT3	YDR394W	AIM29	P36154	155 aa		4.48	□□□□□ -1.69
RPT3	YDR394W	CIN5	P40917	295 aa		4.48	□□□□□ -1.69
RPT3	YDR394W	SCW10	Q04951	389 aa		4.48	□□□□□ -1.69
RPT3	YDR394W	MSA1	Q08471	629 aa		4.48	□□□□□ -1.69
RPT3	YDR394W	NUM1	Q00402	2748 aa		4.48	□□□□□ -1.69
RPT3	YDR394W	YAR029W	P39549	74 aa		4.47	□□□□□ -1.69
RPT3	YDR394W	YEL008W	P40001	126 aa		4.47	□□□□□ -1.69
RPT3	YDR394W	QCR8	P08525	94 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	RPL18A	P0CX49	186 aa	Known RBP	4.46	□□□□□ -1.7
RPT3	YDR394W	RPL18B	P0CX50	186 aa	Known RBP	4.46	□□□□□ -1.7
RPT3	YDR394W	YBR209W	P38311	105 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	SHU1	P38751	150 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	KRE9	P39005	276 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	VTC1	P40046	129 aa	RIP-Chip data	4.46	□□□□□ -1.7	not detected
RPT3	YDR394W	AGE2	P40529	298 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	YFR057W	P43625	151 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	YGR240C-A	Q3E786	66 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	YCL021W-A	Q96VH3	125 aa		4.46	□□□□□ -1.7
RPT3	YDR394W	YER085C	P40058	173 aa		4.45	□□□□□ -1.7
RPT3	YDR394W	YIL059C	P40520	121 aa		4.45	□□□□□ -1.7
RPT3	YDR394W	MRPS12	P53732	153 aa		4.45	□□□□□ -1.7
RPT3	YDR394W	ERI1	P62651	68 aa	Known RBP	4.45	□□□□□ -1.7
RPT3	YDR394W	COX12	Q01519	83 aa		4.45	□□□□□ -1.7
RPT3	YDR394W	LSM6	Q06406	86 aa	Known RBP	4.45	□□□□□ -1.7
RPT3	YDR394W	UGX2	P32772	223 aa		4.44	□□□□□ -1.7
RPT3	YDR394W	ARC15	P40518	154 aa	RIP-Chip data	4.44	□□□□□ -1.7	not detected
RPT3	YDR394W	YGL088W	P53151	121 aa		4.44	□□□□□ -1.7
RPT3	YDR394W	YMR122W-A	Q3E842	84 aa		4.44	□□□□□ -1.7
RPT3	YDR394W	ADH1	P00330	348 aa	Known RBP	4.43	□□□□□ -1.7
RPT3	YDR394W	RPL28	P02406	149 aa	Known RBP	4.43	□□□□□ -1.7
RPT3	YDR394W	CPR1	P14832	162 aa	Known RBP	4.43	□□□□□ -1.7
RPT3	YDR394W	PPT2	Q12036	173 aa		4.43	□□□□□ -1.7
RPT3	YDR394W	ARO2	P28777	376 aa	Known RBP	4.42	□□□□□ -1.7
RPT3	YDR394W	NHP2	P32495	156 aa	Predicted RBP	4.42	□□□□□ -1.7
RPT3	YDR394W	VAM10	Q08474	114 aa		4.42	□□□□□ -1.7
RPT3	YDR394W	RUB1	Q03919	77 aa		4.41	□□□□□ -1.7
RPT3	YDR394W	YCR001W	P25347	104 aa		4.4	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms