RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MAF1Q9H063 256 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZFYVE1Q9HBF4 777 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CYP39A1Q9NYL5 469 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SLC27A6Q9Y2P4 619 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 STARD13Q9Y3M8 1113 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PCDHA5Q9Y5H7 936 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 MEIS2O14770 477 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 FOXD2O60548 495 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 TDP2O95551 362 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CYP11B2P19099 503 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 AKT2P31751 481 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SNRPD1P62314 119 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 TP53BP2Q13625 1128 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PSMD6Q15008 389 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PGM5Q15124 567 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 C6orf118Q5T5N4 469 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 FAM43BQ6ZT52 329 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 C15orf52Q6ZUT6 534 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CDR2LQ86X02 465 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 POF1BQ8WVV4 589 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 HES6Q96HZ4 224 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CDCA3Q99618 268 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 NUP85Q9BW27 656 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 EFCAB8A8MWE9 144 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 GCATO75600 419 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SPATA31D3P0C874 917 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ATF2P15336 505 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LSP1P33241 339 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CLCN6P51797 869 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SEMA3FQ13275 785 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PKN3Q6P5Z2 889 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SPATA31D4Q6ZUB0 917 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 STX19Q8N4C7 294 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 UBLCP1Q8WVY7 318 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PIGKQ92643 395 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 EFHD1Q9BUP0 239 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 BTBD7Q9P203 1132 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZDBF2Q9HCK1 2354 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 DNAJC13O75165 2243 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RASSF10A6NK89 507 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RECQL4O94761 1208 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 GFPT2O94808 682 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 TBX4P57082 545 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZBTB41Q5SVQ8 909 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LBX2Q6XYB7 198 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PID1Q7Z2X4 250 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CYP2U1Q7Z449 544 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 UHRF1Q96T88 793 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SELENOSQ9BQE4 189 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 BACH2Q9BYV9 841 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 INTS7Q9NVH2 962 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PSD3Q9NYI0 1048 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PADI3Q9ULW8 664 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 H7C0S8 307 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CBX4O00257 560 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LBRQ14739 615 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 TMEM31Q5JXX7 168 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PTCRAQ6ISU1 281 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF589Q86UQ0 364 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 COLGALT2Q8IYK4 626 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 MAB21L3Q8N8X9 362 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SPPL2BQ8TCT7 592 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RAPGEF5Q92565 580 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 REXO5Q96IC2 774 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RBM41Q96IZ5 413 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 TUBGCP2Q9BSJ2 902 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LMAN2LQ9H0V9 348 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ARHGEF4Q9NR80 690 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CACNA2D2Q9NY47 1150 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RRN3Q9NYV6 651 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PKD2L2Q9NZM6 624 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 USP32Q8NFA0 1604 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 FAM170AA1A519 330 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF839A8K0R7 811 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ENDOD1O94919 500 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MCF2P10911 925 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SCNN1GP51170 649 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 NLRP12P59046 1061 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 HPCAP84074 193 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 INSCQ1MX18 579 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 NUGGCQ68CJ6 796 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 FAM47EQ6ZV65 393 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MAGEC3Q8TD91 643 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 HMGB4Q8WW32 186 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PLEKHA4Q9H4M7 779 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SFXN1Q9H9B4 322 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CNOT8Q9UFF9 292 aaKnown RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SCOCQ9UIL1 159 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ADGRA2Q96PE1 1338 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TMEM131LA2VDJ0 1609 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 RBAK-RBAKDNI3L0D1 243 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PPP6R2O75170 966 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CCR1P32246 355 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PLA2G4AP47712 749 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CFAP221Q4G0U5 840 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SPOPLQ6IQ16 392 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SLC30A10Q6XR72 485 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TRIM67Q6ZTA4 783 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PTAR1Q7Z6K3 402 aaPredicted RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms