RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 ATP5DP30049 168 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 SCN1AP35498 2009 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 HIC1Q14526 733 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 MFSD10Q14728 455 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 C15orf59Q2T9L4 293 aaPredicted RBP22.56■■□□□ 1.2
CLN6-224ENST00000638076 RNASEH2BQ5TBB1 312 aaKnown RBP22.56■■□□□ 1.2
CLN6-224ENST00000638076 OLFML2BQ68BL8 750 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 MICALCLQ6ZW33 695 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 CHMP6Q96FZ7 201 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 APOL6Q9BWW8 343 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 CALN1Q9BXU9 219 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 FAM49BQ9NUQ9 324 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 GDF10P55107 478 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 RAB6CQ53S08 254 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 PMF1Q6P1K2 205 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 TTC30AQ86WT1 665 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 DNAJB3Q8WWF6 145 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 CNPY3Q9BT09 278 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 FRMD8P1Q9BZ68 369 aaPredicted RBP22.56■■□□□ 1.2
CLN6-224ENST00000638076 RAB6CQ9H0N0 254 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 DDX20Q9UHI6 824 aaKnown RBP22.56■■□□□ 1.2
CLN6-224ENST00000638076 NME7Q9Y5B8 376 aa22.56■■□□□ 1.2
CLN6-224ENST00000638076 C5orf60A6NFR6 353 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 RECQL4O94761 1208 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 AKAP5P24588 427 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 MAP2K5Q13163 448 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 CDO1Q16878 200 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 CHADLQ6NUI6 762 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 ALKAL1Q6UXT8 129 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 CPLX4Q7Z7G2 160 aa22.55■■□□□ 1.2
CLN6-224ENST00000638076 CREB1P16220 341 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 STAT4Q14765 748 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 PCBP1Q15365 356 aaKnown RBP eCLIP22.54■■□□□ 1.2
CLN6-224ENST00000638076 LRRC52Q8N7C0 313 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 PRMT1Q99873 361 aaKnown RBP22.54■■□□□ 1.2
CLN6-224ENST00000638076 CCDC77Q9BR77 488 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 CNTN3Q9P232 1028 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 FOXO6A8MYZ6 492 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 ZNF865P0CJ78 1059 aaPredicted RBP22.54■■□□□ 1.2
CLN6-224ENST00000638076 PKDCCQ504Y2 493 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 HP1BP3Q5SSJ5 553 aaPredicted RBP22.54■■□□□ 1.2
CLN6-224ENST00000638076 OR6B3Q8NGW1 331 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 TMEM40Q8WWA1 233 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 CFAP57Q96MR6 1250 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 TBK1Q9UHD2 729 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 GJD2Q9UKL4 321 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 SHOC2Q9UQ13 582 aa22.54■■□□□ 1.2
CLN6-224ENST00000638076 APOC4-APOC2K7ER74 178 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 APOC2P02655 101 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 ABHD2P08910 425 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 DRD4P21917 467 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 CDH6P55285 790 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 MMRN1Q13201 1228 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 FASTKD3Q14CZ7 662 aaKnown RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 C9orf57Q5W0N0 161 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 CYP4V2Q6ZWL3 525 aaPredicted RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 CYP4X1Q8N118 509 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 RSAD2Q8WXG1 361 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 ZNF317Q96PQ6 595 aaPredicted RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 RSAD1Q9HA92 442 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.53■■□□□ 1.26e-7■■□□□ 13.2
CLN6-224ENST00000638076 PIN4Q9Y237 131 aaKnown RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 ATXN2Q99700 1313 aaKnown RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 RALGAPA2Q2PPJ7 1873 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 CDH16O75309 829 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 KIAA0754O94854 1291 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 ADAM17P78536 824 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 PRCCQ92733 491 aaPredicted RBP22.53■■□□□ 1.2
CLN6-224ENST00000638076 GGA2Q9UJY4 613 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 NAALADL1Q9UQQ1 740 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 ZNF236Q9UL36 1845 aa22.53■■□□□ 1.2
CLN6-224ENST00000638076 NDC80O14777 642 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 TREHO43280 583 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 PRPSAP2O60256 369 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 MAGEA9P43362 315 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 PSEN2P49810 448 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 ZNF200P98182 395 aaPredicted RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 ATP11AP98196 1134 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 SOWAHAQ2M3V2 549 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 OLFML1Q6UWY5 402 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 SEC16BQ96JE7 1060 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 TTC25Q96NG3 672 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 LPIN3Q9BQK8 851 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 MAK16Q9BXY0 300 aaKnown RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 DPEP3Q9H4B8 488 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 HESX1Q9UBX0 185 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 LGALS13Q9UHV8 139 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 UBQLN1Q9UMX0 589 aaKnown RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 FARP1Q9Y4F1 1045 aaPredicted RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 A0A087WUV0 522 aaPredicted RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 TMEM120BA0PK00 339 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 IFNAR2P48551 515 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 CTCFP49711 727 aaPredicted RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 EIF3EP60228 445 aaKnown RBP22.52■■□□□ 1.2
CLN6-224ENST00000638076 IFT88Q13099 833 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 SNX17Q15036 470 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 CCL14Q16627 93 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 CCDC14Q49A88 953 aa22.52■■□□□ 1.2
CLN6-224ENST00000638076 VSTM1Q6UX27 236 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms