RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 BNC1Q01954 994 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 CAV1Q03135 178 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 HNRNPDQ14103 355 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FLOT2Q14254 428 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TRIM25Q14258 630 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 XKR5Q6UX68 686 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 SLC30A10Q6XR72 485 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PRPF39Q86UA1 669 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 CLIP4Q8N3C7 705 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 MARVELD2Q8N4S9 558 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FNIP1Q8TF40 1166 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PTCD2Q8WV60 388 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 CIDECQ96AQ7 238 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 METTL2AQ96IZ6 378 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 RBM15Q96T37 977 aaKnown RBP eCLIP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 DSCC1Q9BVC3 393 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FOXP3Q9BZS1 431 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF696Q9H7X3 374 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TLE6Q9H808 572 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 RMND5AQ9H871 391 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 GJB4Q9NTQ9 266 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PARVAQ9NVD7 372 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TOR4AQ9NXH8 423 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TFCP2L1Q9NZI6 479 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ANKMY1Q9P2S6 941 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ARPP21Q9UBL0 812 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 DBF4Q9UBU7 674 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 KLF15Q9UIH9 416 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ANAPC5Q9UJX4 755 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 STOML2Q9UJZ1 356 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PNPLA7Q6ZV29 1317 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF335Q9H4Z2 1342 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 A0A0B4J203 849 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 GNB5O14775 395 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TFAP2AP05549 437 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 RRM2P31350 389 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 HNF1BP35680 557 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TMPRSS15P98073 1019 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 VAC14Q08AM6 782 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 EXOC3L4Q17RC7 722 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PGS1Q32NB8 556 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FSCBQ5H9T9 825 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 CYP4F22Q6NT55 531 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FIP1L1Q6UN15 594 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 GSTA5Q7RTV2 222 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ADGRG6Q86SQ4 1221 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 SETD3Q86TU7 594 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 RALGPS2Q86X27 583 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 METTL13Q8N6R0 699 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 SCFD2Q8WU76 684 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 P2RX5Q93086 422 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PHKBQ93100 1093 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PPWD1Q96BP3 646 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 C7orf26Q96N11 449 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 WRNIP1Q96S55 665 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 LSM14BQ9BX40 385 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TMEM120AQ9BXJ8 343 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 MTFR1LQ9H019 292 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 GPR108Q9NPR9 543 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 FBXO28Q9NVF7 368 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 ADAMTS1Q9UHI8 967 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 WBP11Q9Y2W2 641 aaKnown RBP5.96□□□□□ -1.46
SCN1A-216ENST00000637968 GPSM3Q9Y4H4 160 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 PTPRTO14522 1441 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 MAST3O60307 1309 aa5.96□□□□□ -1.46
SCN1A-216ENST00000637968 TRIM49BA6NDI0 452 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 BTBD18B2RXH4 712 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 POLR1CO15160 346 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 HSMCR30P0CW71 290 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CDH1P12830 882 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF3P17036 446 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 LTKP29376 864 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 WEE1P30291 646 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MAN1A1P33908 653 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ALDH18A1P54886 795 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 OVGP1Q12889 678 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PTPAQ15257 358 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 DGKDQ16760 1214 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 GPR107Q5VW38 600 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CNNM4Q6P4Q7 775 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 HERVK_113Q902F9 699 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 FIG4Q92562 907 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF75CPQ92670 426 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CDK5RAP1Q96SZ6 601 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TSEN34Q9BSV6 310 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 MAN1C1Q9NR34 630 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 IARS2Q9NSE4 1012 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 PNPLA3Q9NST1 481 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TAS2R1Q9NYW7 299 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ACTL7BQ9Y614 415 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 SOBPA7XYQ1 873 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 M0R3G1 203 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CCNT1O60563 726 aaKnown RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 CCNE1P24864 410 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 RECQLP46063 649 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 ATP6V0D1P61421 351 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TNFAIP2Q03169 654 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 DPYDQ12882 1025 aa5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TOP3AQ13472 1001 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-216ENST00000637968 TMEM67Q5HYA8 995 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms