RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PDE6CP51160 858 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 USP46P62068 366 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 ZNF252P-AS1Q0IIN9 211 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 MYO1EQ12965 1108 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 CYP2U1Q7Z449 544 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 C11orf74Q86VG3 221 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 RASSF3Q86WH2 238 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 HPDLQ96IR7 371 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 ANKRD36BP1Q96IX9 119 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 CLIC6Q96NY7 704 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 FGFBP2Q9BYJ0 223 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 TMEM9BQ9NQ34 198 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 CRTAC1Q9NQ79 661 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 TRPM5Q9NZQ8 1165 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 CDH9Q9ULB4 789 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 MMP17Q9ULZ9 603 aa20.75■□□□□ 0.91
CLN3-262ENST00000637699 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.75■□□□□ 0.91
CLN3-262ENST00000637699 SCAMP3O14828 347 aaKnown RBP20.74■□□□□ 0.91
CLN3-262ENST00000637699 SPINK2P20155 84 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 CYP27A1Q02318 531 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 GAB4Q2WGN9 574 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 VSTM1Q6UX27 236 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 DPH6Q7L8W6 267 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 MDGA1Q8NFP4 955 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 OR5B17Q8NGF7 314 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 KBTBD7Q8WVZ9 684 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 SPATA17Q96L03 361 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 CNOT6LQ96LI5 555 aaKnown RBP20.74■□□□□ 0.91
CLN3-262ENST00000637699 OLFML3Q9NRN5 406 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 INTS13Q9NVM9 706 aa20.74■□□□□ 0.91
CLN3-262ENST00000637699 FBXO2Q9UK22 296 aaPredicted RBP20.74■□□□□ 0.91
CLN3-262ENST00000637699 CIZ1Q9ULV3 898 aaPredicted RBP20.74■□□□□ 0.91
CLN3-262ENST00000637699 VPS37CA5D8V6 355 aaPredicted RBP20.73■□□□□ 0.91
CLN3-262ENST00000637699 CDX4O14627 284 aaPredicted RBP20.73■□□□□ 0.91
CLN3-262ENST00000637699 PRPF6O94906 941 aaKnown RBP20.73■□□□□ 0.91
CLN3-262ENST00000637699 ABL1P00519 1130 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 ANXA13P27216 316 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 TXLNAP40222 546 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 IRX4P78413 519 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 CRY1Q16526 586 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 UAP1L1Q3KQV9 507 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 UNQ6494/PRO21346Q6UXR6 183 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 TMEM92Q6UXU6 159 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 DENND5BQ6ZUT9 1274 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 FILIP1Q7Z7B0 1213 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 SFTPA1Q8IWL2 248 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 GPD1LQ8N335 351 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 PIGKQ92643 395 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 PANK2Q9BZ23 570 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 RNF38Q9H0F5 515 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 PANK4Q9NVE7 773 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 SMPD4Q9NXE4 827 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 SRPRBQ9Y5M8 271 aaKnown RBP20.73■□□□□ 0.91
CLN3-262ENST00000637699 PTPRJQ12913 1337 aa20.73■□□□□ 0.91
CLN3-262ENST00000637699 TNNC2P02585 160 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 CYP17A1P05093 508 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 HNRNPLP14866 589 aaKnown RBP eCLIP20.72■□□□□ 0.91
CLN3-262ENST00000637699 SLC6A11P48066 632 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 ALCAMQ13740 583 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 MAPRE1Q15691 268 aaKnown RBP20.72■□□□□ 0.91
CLN3-262ENST00000637699 LIMS2Q7Z4I7 341 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 ADGRG2Q8IZP9 1017 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 ALLCQ8N6M5 410 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 RLN3Q8WXF3 142 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 MMS19Q96T76 1030 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 HELZP42694 1942 aaKnown RBP20.72■□□□□ 0.91
CLN3-262ENST00000637699 ZZEF1O43149 2961 aa20.72■□□□□ 0.91
CLN3-262ENST00000637699 ZNF840PA6NDX5 716 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 ALDH1A2O94788 518 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 TOP3BO95985 862 aaKnown RBP20.71■□□□□ 0.91
CLN3-262ENST00000637699 PFKLP17858 780 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 TIE1P35590 1138 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 MRPS21P82921 87 aaKnown RBP20.71■□□□□ 0.91
CLN3-262ENST00000637699 CEBPZQ03701 1054 aaKnown RBP20.71■□□□□ 0.91
CLN3-262ENST00000637699 MESP2Q0VG99 397 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 DHCR24Q15392 516 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 TXNDC5Q8NBS9 432 aaKnown RBP20.71■□□□□ 0.91
CLN3-262ENST00000637699 PCED1BQ96HM7 432 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 ZMIZ1Q9ULJ6 1067 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 CPQQ9Y646 472 aa20.71■□□□□ 0.91
CLN3-262ENST00000637699 ZNF233A6NK53 670 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 F8VP50 259 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 MAP3K13O43283 966 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 KLF8O95600 359 aaPredicted RBP20.7■□□□□ 0.9
CLN3-262ENST00000637699 CEACAM1P13688 526 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 CSRP1P21291 193 aaKnown RBP20.7■□□□□ 0.9
CLN3-262ENST00000637699 WARSP23381 471 aaKnown RBP20.7■□□□□ 0.9
CLN3-262ENST00000637699 STAT6P42226 847 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 SLC7A9P82251 487 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 DUOXA2Q1HG44 320 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 MDH1BQ5I0G3 518 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 EMC10Q5UCC4 262 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 CCDC73Q6ZRK6 1079 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 ARMCX6Q7L4S7 300 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 HS2ST1Q7LGA3 356 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 CBWD2Q8IUF1 395 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 FRMD1Q8N878 549 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 OLIG1Q8TAK6 271 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 MYCBPAPQ8TBZ2 947 aa20.7■□□□□ 0.9
CLN3-262ENST00000637699 CEP295NLQ96MC4 621 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 1865.3 ms