RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FEZF2Q8TBJ5 459 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 PPM1EQ8WY54 764 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 SPATA17Q96L03 361 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 MFRPQ9BY79 579 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 PRKD2Q9BZL6 878 aa20.87■□□□□ 0.93
UPF3A-211ENST00000618700 UBE2ZQ9H832 354 aaPredicted RBP20.87■□□□□ 0.93
UPF3A-211ENST00000618700 LUC7L2Q9Y383 392 aaKnown RBP20.87■□□□□ 0.93
UPF3A-211ENST00000618700 SPTBN5Q9NRC6 3674 aaKnown RBP20.87■□□□□ 0.93
UPF3A-211ENST00000618700 MED7O43513 233 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 LRG1P02750 347 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 FERP16591 822 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 ALDH1A3P47895 512 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 BST2Q10589 180 aaKnown RBP20.86■□□□□ 0.93
UPF3A-211ENST00000618700 IRF2BP2Q7Z5L9 587 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 SCN4BQ8IWT1 228 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 C12orf76Q8N812 135 aaPredicted RBP20.86■□□□□ 0.93
UPF3A-211ENST00000618700 CPLX3Q8WVH0 158 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 SYN2Q92777 582 aaPredicted RBP20.86■□□□□ 0.93
UPF3A-211ENST00000618700 NUCKS1Q9H1E3 243 aaKnown RBP20.86■□□□□ 0.93
UPF3A-211ENST00000618700 PNPLA8Q9NP80 782 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 HESX1Q9UBX0 185 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 PCDHGC3Q9UN70 934 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 COL6A3P12111 3177 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 PRUNE2Q8WUY3 3088 aa20.86■□□□□ 0.93
UPF3A-211ENST00000618700 CCDC195A0A1B0GUA6 201 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 HHLA1C9JL84 531 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 M0QYV0 167 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 CFHP08603 1231 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 SETSIPP0DME0 302 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 GRIK1P39086 918 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 EPHB3P54753 998 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 MAP3K7CLP57077 242 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 ARID5AQ03989 594 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 SKIV2LQ15477 1246 aaKnown RBP20.85■□□□□ 0.93
UPF3A-211ENST00000618700 RARS2Q5T160 578 aaKnown RBP20.85■□□□□ 0.93
UPF3A-211ENST00000618700 SFMBT2Q5VUG0 894 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 SDHAF4Q5VUM1 108 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 ZNF677Q86XU0 584 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 SLC20A1Q8WUM9 679 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 PSMG2Q969U7 264 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 KCNK16Q96T55 309 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 S1PR5Q9H228 398 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 ASB3Q9Y575 518 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 XIRP2A4UGR9 3374 aa20.85■□□□□ 0.93
UPF3A-211ENST00000618700 TNFRSF10BO14763 440 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 CCL16O15467 120 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 MFAP3LO75121 409 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 XYLBO75191 536 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 CCDC172P0C7W6 258 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 HNRNPH3P31942 346 aaKnown RBP20.84■□□□□ 0.93
UPF3A-211ENST00000618700 SSTR3P32745 418 aaPredicted RBP20.84■□□□□ 0.93
UPF3A-211ENST00000618700 KRT9P35527 623 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 PRKCIP41743 596 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 PDE4CQ08493 712 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 ASIC2Q16515 512 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 DENND1BQ6P3S1 775 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 TMC5Q6UXY8 1006 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 CYP26C1Q6V0L0 522 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 EP400NLQ6ZTU2 488 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.84■□□□□ 0.93
UPF3A-211ENST00000618700 GPR149Q86SP6 731 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 SMRP1Q8NCR6 262 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 GIPC2Q8TF65 315 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 DNAJC7Q99615 494 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 SYT11Q9BT88 431 aa20.84■□□□□ 0.93
UPF3A-211ENST00000618700 XPO1O14980 1071 aaKnown RBP20.83■□□□□ 0.93
UPF3A-211ENST00000618700 TPM1P09493 284 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 CHRNB2P17787 502 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 ANXA13P27216 316 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 GPD2P43304 727 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 PLA2G4AP47712 749 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 CDR2Q01850 454 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 ITIH3Q06033 890 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 VEPH1Q14D04 833 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 TAF3Q5VWG9 929 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 STKLD1Q8NE28 680 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 OLIG1Q8TAK6 271 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 UBA3Q8TBC4 463 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 GPR152Q8TDT2 470 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 SLC35F5Q8WV83 523 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 SMG7Q92540 1137 aaKnown RBP20.83■□□□□ 0.93
UPF3A-211ENST00000618700 HLA-CQ95604 372 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 UBXN6Q9BZV1 441 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 LHX5Q9H2C1 402 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 ADAM7Q9H2U9 754 aa20.83■□□□□ 0.93
UPF3A-211ENST00000618700 C2orf16Q68DN1 1984 aa20.83■□□□□ 0.92
UPF3A-211ENST00000618700 GREB1Q4ZG55 1949 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 SLC38A8A6NNN8 435 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 H3BQ06 376 aaPredicted RBP20.82■□□□□ 0.92
UPF3A-211ENST00000618700 TULP2O00295 520 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 MMEP08473 750 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 CSH1P0DML2 217 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 CSH2P0DML3 217 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 HMGA1P17096 107 aaKnown RBP20.82■□□□□ 0.92
UPF3A-211ENST00000618700 KCNA5P22460 613 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 MRE11P49959 708 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 SLC5A3P53794 718 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 SLC8A3P57103 927 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 FMO1Q01740 532 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 HGSNATQ68CP4 663 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms