RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RASIP1Q5U651 963 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 DCUN1D2Q6PH85 259 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 PEX26Q7Z412 305 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 DDX53Q86TM3 631 aaKnown RBP14.42□□□□□ -0.1
CCDC40-209ENST00000573474 PIGZQ86VD9 579 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 SP7Q8TDD2 431 aaPredicted RBP14.42□□□□□ -0.1
CCDC40-209ENST00000573474 PIK3R5Q8WYR1 880 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 HERC2P3Q9BVR0 1158 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 VN1R3Q9BXE9 311 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 CSNK1G1Q9HCP0 422 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 BACE2Q9Y5Z0 518 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 ALG6Q9Y672 507 aa14.42□□□□□ -0.1
CCDC40-209ENST00000573474 TMEM110-MUSTN1A8MSY1 372 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 TLL1O43897 1013 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 GABBR2O75899 941 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 BEST1O76090 585 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 OR4Q2P0C623 313 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 PRLRP16471 622 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 SCNN1AP37088 669 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 SLC6A3Q01959 620 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 KRT17Q04695 432 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 RPS6KA1Q15418 735 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 KIAA1841Q6NSI8 718 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 FAM183BPQ6ZVS7 135 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 NT5DC3Q86UY8 548 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 RIN2Q8WYP3 895 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-209ENST00000573474 CLP1Q92989 425 aaKnown RBP14.41□□□□□ -0.1
CCDC40-209ENST00000573474 FUBP3Q96I24 572 aaKnown RBP eCLIP14.41□□□□□ -0.1
CCDC40-209ENST00000573474 BTBD6Q96KE9 485 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 MCEEQ96PE7 176 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 TLR10Q9BXR5 811 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 LRRC4Q9HBW1 653 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 DMAP1Q9NPF5 467 aaPredicted RBP14.41□□□□□ -0.1
CCDC40-209ENST00000573474 MTRRQ9UBK8 725 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 IP6K2Q9UHH9 426 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 PCDHB5Q9Y5E4 795 aa14.41□□□□□ -0.1
CCDC40-209ENST00000573474 PIK3R2O00459 728 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 PAPSS1O43252 624 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 NCK2O43639 380 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 PROSCO94903 275 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 FBXO21O94952 628 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 GJB6O95452 261 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 LCP1P13796 627 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 COMTP21964 271 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 SLC1A1P43005 524 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 CDR1P51861 262 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 RPL7AP62424 266 aaKnown RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 AMPD2Q01433 879 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 DSG1Q02413 1049 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 GPR17Q13304 367 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 PSMD5Q16401 504 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 CFAP221Q4G0U5 840 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 FAM102AQ5T9C2 384 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 PRSS55Q6UWB4 352 aaPredicted RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 OLFML1Q6UWY5 402 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 SCUBE3Q8IX30 993 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 ZMIZ2Q8NF64 920 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 C2orf15Q8WU43 125 aaKnown RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 KCNK16Q96T55 309 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 RHOBTB2Q9BYZ6 727 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 TRIM7Q9C029 511 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 GOLPH3Q9H4A6 298 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 PNPLA8Q9NP80 782 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 METTL5Q9NRN9 209 aaKnown RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 SNX12Q9UMY4 172 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 HYOU1Q9Y4L1 999 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 SAR1BQ9Y6B6 198 aa14.4□□□□□ -0.1
CCDC40-209ENST00000573474 MKI67P46013 3256 aaKnown RBP14.4□□□□□ -0.1
CCDC40-209ENST00000573474 PTPRSQ13332 1948 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 MIF4GDA9UHW6 222 aaKnown RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 HHLA1C9JL84 531 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 SPOPO43791 374 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 LINC00271P0C7V0 271 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 CPB1P15086 417 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 TCP1P17987 556 aaKnown RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 CYP2F1P24903 491 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 MAN1A1P33908 653 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 RFC1P35251 1148 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 GRIK1P39086 918 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 MAGEA10P43363 369 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 MAGEA11P43364 429 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 GLUD2P49448 558 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 CACNA2D1P54289 1103 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 ARPP19P56211 112 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 PIGHQ14442 188 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 RAB41Q5JT25 222 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 EFHC1Q5JVL4 640 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 SLC8B1Q6J4K2 584 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 VSTM1Q6UX27 236 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 RSPO2Q6UXX9 243 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 GPR65Q8IYL9 337 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 SIX6OS1Q8N1H7 587 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 FBXO22Q8NEZ5 403 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 JOSD2Q8TAC2 188 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 FNIP1Q8TF40 1166 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 HES6Q96HZ4 224 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 TMEM30AQ9NV96 361 aa14.39□□□□□ -0.11
CCDC40-209ENST00000573474 ABI2Q9NYB9 513 aaPredicted RBP14.39□□□□□ -0.11
CCDC40-209ENST00000573474 CDC23Q9UJX2 597 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms