RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 RAD51AP2Q09MP3 1159 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 CAMK2BQ13554 666 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 ZNF174Q15697 407 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 RABEPKQ7Z6M1 372 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 FILIP1Q7Z7B0 1213 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 GLRX5Q86SX6 157 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 ADGRG2Q8IZP9 1017 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 TMEM161BQ8NDZ6 487 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 SETD7Q8WTS6 366 aaKnown RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 DRC1Q96MC2 740 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 PNKPQ96T60 521 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 KRTAP3-3Q9BYR6 98 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 KRTAP3-2Q9BYR7 98 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 IL21RQ9HBE5 538 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 CALCOCO1Q9P1Z2 691 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 KIAA1522Q9P206 1035 aaPredicted RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 ZNF462Q96JM2 2506 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 OBSL1O75147 1896 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 ZNF638Q14966 1978 aaKnown RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 URB1O60287 2271 aaKnown RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 IGHV1OR15-9A0A0B4J2B8 117 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 A0A1W2PQD8 194 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 ANO9A1A5B4 782 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 FAM189A1O60320 539 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 NOL4O94818 638 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 APODP05090 189 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 NFICP08651 508 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 OR52Z1P0C646 297 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 ATXN1LP0C7T5 689 aaKnown RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 MAPTP10636 758 aaKnown RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 ABCG1P45844 678 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 SMARCB1Q12824 385 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 GRIK2Q13002 908 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 DHCR24Q15392 516 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 CCDC142Q17RM4 750 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 HAUS3Q68CZ6 603 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 RINT1Q6NUQ1 792 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 ZPBP2Q6X784 338 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 SLC36A4Q6YBV0 504 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 DCP1BQ8IZD4 617 aaKnown RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 RGL4Q8IZJ4 473 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 SPATA18Q8TC71 538 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 WASF1Q92558 559 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 TRMT2BQ96GJ1 504 aaKnown RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 MYRFLQ96LU7 910 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 NTPCRQ9BSD7 190 aaKnown RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 RPF1Q9H9Y2 349 aaKnown RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 CD93Q9NPY3 652 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 PDRG1Q9NUG6 133 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 UXTQ9UBK9 157 aaPredicted RBP12.66□□□□□ -0.38
CLK3-222ENST00000568232 DSEQ9UL01 958 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 ARHGAP26Q9UNA1 814 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 CYP8B1Q9UNU6 501 aa12.66□□□□□ -0.38
CLK3-222ENST00000568232 PTPRBP23467 1997 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 A0A0A0MRY4 1105 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 LEFTY2O00292 366 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 PFKFB2O60825 505 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 ADRB2P07550 413 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 TCF3P15923 654 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 WASP42768 502 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 ATP2C1P98194 919 aaPredicted RBP12.65□□□□□ -0.38
CLK3-222ENST00000568232 KCNB1Q14721 858 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 HSF5Q4G112 596 aaPredicted RBP12.65□□□□□ -0.38
CLK3-222ENST00000568232 C1orf186Q6ZWK4 172 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 BICD1Q96G01 975 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 PRORYQ9H606 182 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 PRDM16Q9HAZ2 1276 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 ARHGEF4Q9NR80 690 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 LRWD1Q9UFC0 647 aa12.65□□□□□ -0.38
CLK3-222ENST00000568232 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.65□□□□□ -0.38
CLK3-222ENST00000568232 HELZP42694 1942 aaKnown RBP12.64□□□□□ -0.39
CLK3-222ENST00000568232 J3QKU1 62 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 PAX3P23760 479 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 RESTQ13127 1097 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 RHBDF2Q6PJF5 856 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 KCNK18Q7Z418 384 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 SPIRE2Q8WWL2 714 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 ZNF419Q96HQ0 510 aaPredicted RBP12.64□□□□□ -0.39
CLK3-222ENST00000568232 SLC6A17Q9H1V8 727 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 C17orf75Q9HAS0 396 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 HCN2Q9UL51 889 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 DNM3Q9UQ16 869 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 ATMQ13315 3056 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 PLXND1Q9Y4D7 1925 aa12.64□□□□□ -0.39
CLK3-222ENST00000568232 ANK1P16157 1881 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 PP2D1A8MPX8 630 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 OGTO15294 1046 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 DKK1O94907 266 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 PLS3P13797 630 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 ACAT1P24752 427 aaKnown RBP12.63□□□□□ -0.39
CLK3-222ENST00000568232 GRIA2P42262 883 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 TNFRSF4P43489 277 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 TAF6P49848 677 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 RPL10AP62906 217 aaKnown RBP12.63□□□□□ -0.39
CLK3-222ENST00000568232 TSPY1Q01534 308 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 TMEM132DQ14C87 1099 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 MIB1Q86YT6 1006 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 SPNS2Q8IVW8 549 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 SCN4BQ8IWT1 228 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 PHTF2Q8N3S3 785 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms