RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GPD1P21695 349 aa21.28■■□□□ 1
CLN3-230ENST00000568076 PCK1P35558 622 aa21.28■■□□□ 1
CLN3-230ENST00000568076 PSEN2P49810 448 aa21.28■■□□□ 1
CLN3-230ENST00000568076 GDF10P55107 478 aa21.28■■□□□ 1
CLN3-230ENST00000568076 C15orf59Q2T9L4 293 aaPredicted RBP21.28■■□□□ 1
CLN3-230ENST00000568076 LRRC52Q8N7C0 313 aa21.28■■□□□ 1
CLN3-230ENST00000568076 LPIN3Q9BQK8 851 aa21.28■■□□□ 1
CLN3-230ENST00000568076 PCDH9Q9HC56 1237 aa21.28■■□□□ 1
CLN3-230ENST00000568076 FAM49BQ9NUQ9 324 aa21.28■■□□□ 1
CLN3-230ENST00000568076 TPX2Q9ULW0 747 aaKnown RBP21.28■■□□□ 1
CLN3-230ENST00000568076 FAM169AQ9Y6X4 670 aa21.28■■□□□ 1
CLN3-230ENST00000568076 SGK1O00141 431 aa21.27■■□□□ 1
CLN3-230ENST00000568076 TRIM66O15016 1216 aa21.27■■□□□ 1
CLN3-230ENST00000568076 HCRTO43612 131 aa21.27■■□□□ 1
CLN3-230ENST00000568076 TCEA3O75764 348 aa21.27■■□□□ 1
CLN3-230ENST00000568076 MAGEA4P43358 317 aa21.27■■□□□ 1
CLN3-230ENST00000568076 CORO7P57737 925 aa21.27■■□□□ 1
CLN3-230ENST00000568076 IRF5Q13568 498 aa21.27■■□□□ 1
CLN3-230ENST00000568076 SNX17Q15036 470 aa21.27■■□□□ 1
CLN3-230ENST00000568076 PCBP1Q15365 356 aaKnown RBP eCLIP21.27■■□□□ 1
CLN3-230ENST00000568076 STILQ15468 1287 aa21.27■■□□□ 1
CLN3-230ENST00000568076 QPCTQ16769 361 aa21.27■■□□□ 1
CLN3-230ENST00000568076 RNASEH2BQ5TBB1 312 aaKnown RBP21.27■■□□□ 1
CLN3-230ENST00000568076 C9orf57Q5W0N0 161 aa21.27■■□□□ 1
CLN3-230ENST00000568076 USP6NLQ92738 828 aa21.27■■□□□ 1
CLN3-230ENST00000568076 CNPY3Q9BT09 278 aa21.27■■□□□ 1
CLN3-230ENST00000568076 APOL6Q9BWW8 343 aa21.27■■□□□ 1
CLN3-230ENST00000568076 FOXP3Q9BZS1 431 aa21.27■■□□□ 1
CLN3-230ENST00000568076 STMN4Q9H169 189 aaPredicted RBP21.27■■□□□ 1
CLN3-230ENST00000568076 GABBR2O75899 941 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 IFNB1P01574 187 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 PDGFRAP16234 1089 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 BEX3Q00994 111 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 SOWAHAQ2M3V2 549 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 OLFML1Q6UWY5 402 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 TRIM6Q9C030 488 aaPredicted RBP21.27■□□□□ 0.99
CLN3-230ENST00000568076 RNF39Q9H2S5 420 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 DPEP3Q9H4B8 488 aa21.27■□□□□ 0.99
CLN3-230ENST00000568076 PIN4Q9Y237 131 aaKnown RBP21.27■□□□□ 0.99
CLN3-230ENST00000568076 FOXO6A8MYZ6 492 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 CDR1P51861 262 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 HUNKP57058 714 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 CCDC142Q17RM4 750 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 B4GALNT4Q76KP1 1039 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 TTC13Q8NBP0 860 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 KHSRPQ92945 711 aaKnown RBP eCLIP21.26■□□□□ 0.99
CLN3-230ENST00000568076 SAYSD1Q9NPB0 183 aa21.26■□□□□ 0.99
CLN3-230ENST00000568076 ENDOD1O94919 500 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CREB1P16220 341 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 MMRN1Q13201 1228 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 FASTKD3Q14CZ7 662 aaKnown RBP21.25■□□□□ 0.99
CLN3-230ENST00000568076 MORF4L2Q15014 288 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CCDC14Q49A88 953 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 UBXN11Q5T124 520 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 RFX6Q8HWS3 928 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 SLC35F5Q8WV83 523 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 ARHGEF2Q92974 986 aaKnown RBP21.25■□□□□ 0.99
CLN3-230ENST00000568076 SLC4A5Q9BY07 1137 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 FRMD8P1Q9BZ68 369 aaPredicted RBP21.25■□□□□ 0.99
CLN3-230ENST00000568076 KLK14Q9P0G3 267 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 SMIM28A0A1B0GU29 152 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 C5orf60A6NFR6 353 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 MYL3P08590 195 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CYP2B6P20813 491 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 AXLP30530 894 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CDO1Q16878 200 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CYP4F22Q6NT55 531 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 TMEM110Q86TL2 294 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CYP4X1Q8N118 509 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 OR6B3Q8NGW1 331 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 PRCCQ92733 491 aaPredicted RBP21.25■□□□□ 0.99
CLN3-230ENST00000568076 CFAP57Q96MR6 1250 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 CALN1Q9BXU9 219 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 MIS12Q9H081 205 aa21.25■□□□□ 0.99
CLN3-230ENST00000568076 UBQLN1Q9UMX0 589 aaKnown RBP21.25■□□□□ 0.99
CLN3-230ENST00000568076 PIRO00625 290 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 SPTLC1O15269 473 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 FGFR1P11362 822 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 TAF1CQ15572 869 aaPredicted RBP21.24■□□□□ 0.99
CLN3-230ENST00000568076 TAOK1Q7L7X3 1001 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 RASAL3Q86YV0 1011 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 UNC45BQ8IWX7 931 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 KBTBD7Q8WVZ9 684 aa21.24■□□□□ 0.99
CLN3-230ENST00000568076 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.24■□□□□ 0.99
CLN3-230ENST00000568076 FARP1Q9Y4F1 1045 aaPredicted RBP21.24■□□□□ 0.99
CLN3-230ENST00000568076 APOC4-APOC2K7ER74 178 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 PAPSS1O43252 624 aaPredicted RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 APOC2P02655 101 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 DRD4P21917 467 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 CPT1AP50416 773 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 PDE4CQ08493 712 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 UNC93AQ86WB7 457 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 SCUBE3Q8IX30 993 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 ZNF317Q96PQ6 595 aaPredicted RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 INTS9Q9NV88 658 aaKnown RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 EURLQ9NYK6 297 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 DDX20Q9UHI6 824 aaKnown RBP21.23■□□□□ 0.99
CLN3-230ENST00000568076 SHOC2Q9UQ13 582 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 A8MXQ7 604 aa21.23■□□□□ 0.99
CLN3-230ENST00000568076 DPYSL4O14531 572 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms