RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MDH1BQ5I0G3 518 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 CPA6Q8N4T0 437 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 TTC16Q8NEE8 873 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 P2RY13Q9BPV8 354 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 RCOR1Q9UKL0 485 aa17.16■□□□□ 0.34
CLN3-229ENST00000567963 MED19A0JLT2 244 aaPredicted RBP17.15■□□□□ 0.34
CLN3-229ENST00000567963 EXOC3O60645 756 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 LRP3O75074 770 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 TCF3P15923 654 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 PTPN1P18031 435 aaKnown RBP17.15■□□□□ 0.34
CLN3-229ENST00000567963 PDE6CP51160 858 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 ATXN1P54253 815 aaKnown RBP17.15■□□□□ 0.34
CLN3-229ENST00000567963 MYL6P60660 151 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 NOP14P78316 857 aaKnown RBP17.15■□□□□ 0.34
CLN3-229ENST00000567963 DNM1Q05193 864 aaKnown RBP17.15■□□□□ 0.34
CLN3-229ENST00000567963 TRPC3Q13507 836 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 EML3Q32P44 896 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 GRAMD1CQ8IYS0 662 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 CEP57L1Q8IYX8 460 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 SH3RF2Q8TEC5 729 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 ATP2A3Q93084 1043 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 C8orf48Q96LL4 319 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 TTLL2Q9BWV7 592 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 XYLT2Q9H1B5 865 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 EHD2Q9NZN4 543 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 TRPM5Q9NZQ8 1165 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 SERTAD1Q9UHV2 236 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 ARHGAP26Q9UNA1 814 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 WNT6Q9Y6F9 365 aa17.15■□□□□ 0.34
CLN3-229ENST00000567963 F8VP50 259 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 KLRC4O43908 158 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 RNF40O75150 1001 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 SLFN14P0C7P3 912 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 PFKLP17858 780 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 ATICP31939 592 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 PPP3CCP48454 512 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 IFNAR2P48551 515 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 CASP4P49662 377 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 ZXDBP98169 803 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 FBXO43Q4G163 708 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 NAIF1Q69YI7 327 aaPredicted RBP17.14■□□□□ 0.33
CLN3-229ENST00000567963 SPRYD3Q8NCJ5 442 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 SYAP1Q96A49 352 aaPredicted RBP17.14■□□□□ 0.33
CLN3-229ENST00000567963 EXOC4Q96A65 974 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 LINC00597Q9H2U6 94 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 DPEP3Q9H4B8 488 aa17.14■□□□□ 0.33
CLN3-229ENST00000567963 NXF1Q9UBU9 619 aaKnown RBP17.14■□□□□ 0.33
CLN3-229ENST00000567963 HELZP42694 1942 aaKnown RBP17.14■□□□□ 0.33
CLN3-229ENST00000567963 CCDC163A0A0D9SF12 145 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 ZNF840PA6NDX5 716 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 A8MXQ7 604 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 PXNP49023 591 aaPredicted RBP17.13■□□□□ 0.33
CLN3-229ENST00000567963 CACNA2D1P54289 1103 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 CLDN10P78369 228 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 STK4Q13043 487 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 CEP68Q76N32 757 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.13■□□□□ 0.33
CLN3-229ENST00000567963 FAM160A2Q8N612 972 aaPredicted RBP17.13■□□□□ 0.33
CLN3-229ENST00000567963 GOLGA5Q8TBA6 731 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 PLEKHO2Q8TD55 490 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 PARD3BQ8TEW8 1205 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 CD101Q93033 1021 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 PAGE5Q96GU1 130 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 VRTNQ9H8Y1 702 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 SEMA4GQ9NTN9 838 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 TMEM30AQ9NV96 361 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 CDV3Q9UKY7 258 aaKnown RBP17.13■□□□□ 0.33
CLN3-229ENST00000567963 SLC8A2Q9UPR5 921 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.13■□□□□ 0.33
CLN3-229ENST00000567963 RALGAPA1Q6GYQ0 2036 aa17.13■□□□□ 0.33
CLN3-229ENST00000567963 ACTN4O43707 911 aaKnown RBP17.12■□□□□ 0.33
CLN3-229ENST00000567963 PHACTR2O75167 634 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 NR1H3Q13133 447 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 PSMD2Q13200 908 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 TDRD10Q5VZ19 366 aaKnown RBP17.12■□□□□ 0.33
CLN3-229ENST00000567963 CAMKK1Q8N5S9 505 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 B3GALNT2Q8NCR0 500 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 KIAA0895Q8NCT3 520 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 TMEM174Q8WUU8 243 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 B3GNT5Q9BYG0 378 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 ELOVL4Q9GZR5 314 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 RNF38Q9H0F5 515 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 DMAC2Q9NW81 257 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 LRRIQ3A6PVS8 624 aaPredicted RBP17.12■□□□□ 0.33
CLN3-229ENST00000567963 LEFTY2O00292 366 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 CLDN5O00501 218 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 C4BPAP04003 597 aaKnown RBP17.12■□□□□ 0.33
CLN3-229ENST00000567963 AP3M2P53677 418 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 CDH8P55286 799 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 SLC7A9P82251 487 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 TAF10Q12962 218 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 CSRP2Q16527 193 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 KMT5BQ4FZB7 885 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 SLC9A9Q8IVB4 645 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 GAB3Q8WWW8 586 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 EZH1Q92800 747 aaPredicted RBP17.12■□□□□ 0.33
CLN3-229ENST00000567963 RTKNQ9BST9 563 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 ZNF518BQ9C0D4 1074 aa17.12■□□□□ 0.33
CLN3-229ENST00000567963 POLR3BQ9NW08 1133 aaPredicted RBP17.12■□□□□ 0.33
CLN3-229ENST00000567963 RPP40O75818 363 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms